Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20brachyrhynchos_20[refseq_20GCF_5F000691975.1_202014-06-02] 10,547 sequences; 1,091,312,783 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2879 91.5 2e-16 seq8320 78.8 2e-12 >seq2879 Length=24416 Score = 91.5 bits (100), Expect = 2e-16 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||||||| | | ||| |||| || |||| || || | Sbjct 11738 GTACGAGAGGAACCGCAGG-TTCAGAACACT-GGTGCGTGCGCTTGGCTGAGGAGACACT 11795 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 | ||||| |||||||||||| || ||||| ||||||||||||||||| Sbjct 11796 GGCGCGAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTC 11842 >seq8320 Length=393 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || || || ||||| |||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 391 AGCCACTGGCGCGAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATC 332 Query 114 C 114 | Sbjct 331 C 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819116299008