Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20cornix_20cornix_20[refseq_20GCF_5F000738735.2_202017-03-08] 113 sequences; 1,042,281,180 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq59 167 4e-39 seq29 80.6 5e-13 >seq59 Length=44895046 Score = 167 bits (184), Expect = 4e-39 Identities = 169/219 (77%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||| | |||||| | |||||||||| ||||| | | |||||||| ||| Sbjct 40818288 CCAGCTCACCTCCCCTATCA-TGGGTGAACAGTCCAATGTCTGGTGAATTCTGTTTCACA 40818346 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||| | || |||||||||||||| | || ||||||||| |||||||| Sbjct 40818347 TCAATAGGAAGAGCCAAGATGGAAGGATCAAAAAGTGATGTTGCTATGAACACTTGGCTG 40818406 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||||||||| ||||||||||||||||||||| || ||| || | ||| | | | Sbjct 40818407 CCACAAGCCAGTCATCCCTGTGGTAACTTTTCTGACATCTCCTGCTTGAAACACCAAAAG 40818466 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| ||| ||||| |||||||| || |||||| Sbjct 40818467 GCAGAAGAATCATGAGGCCCCACTTTCACAGTCTGTATT 40818505 >seq29 Length=38882285 Score = 80.6 bits (88), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 19/217 (9%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| | | |||||||||| | |||||| | || |||||||||||| || Sbjct 2833368 TCATCAGCAAGATAAAACTAACTTTCCTCATGGCTGTTTAAACCCAGCTCGCG------- 2833420 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || || ||| ||||| ||| |||||||| || | | ||| ||||| |||| | Sbjct 2833421 TTAATGTGTAAACTGACCAACACTTGGTGAATTCTGTTTTGTTGTGACAGGAACAGCCAA 2833480 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT---GGCTGCCACAAGCCAGTTA 207 |||| | | | |||| || | | | ||| ||| ||||| ||| ||| | Sbjct 2833481 CATCAATTGTT---AAAGTGACTTTGAT---AACACTTGAGGGCTG-TACA--GCAGCTT 2833531 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 || |||||||||| || |||||| |||| || | ||| Sbjct 2833532 TCTCTGTGGTAACCTTACTGGCATCTCTTGCTTAAAA 2833568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399034528