Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Corvus_20cornix_20cornix_20[refseq_20GCF_5F000738735.2_202017-03-08] 113 sequences; 1,042,281,180 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11 279 2e-72 seq77 77.0 1e-11 >seq11 Length=3711121 Score = 279 bits (308), Expect = 2e-72 Identities = 183/201 (91%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| Sbjct 3435521 TCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAAC 3435462 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||| || Sbjct 3435461 AGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGA 3435402 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||| Sbjct 3435401 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCGTTCATGCGCATCACTAATTAGATGA 3435342 Query 418 CGAGGCATTTGGCTACCTTAA 438 ||||||||||||||| ||||| Sbjct 3435341 CGAGGCATTTGGCTA-CTTAA 3435322 >seq77 Length=59109413 Score = 77.0 bits (84), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||| | || | || |||||| || | ||| || ||| |||||||||||||||| Sbjct 31386444 CTTAAGAAAATCCCAAGTCACTCCCACCATCTACT-GCACTTCATTGAATTTCTTCACTT 31386502 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||| | |||||||||||||||||||| Sbjct 31386503 TGACATGCCAGGCACTGGGCAGAAATCACAT 31386533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198152224