Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq253 165 1e-38 seq949 116 6e-24 seq1 86.0 9e-15 >seq253 Length=134823679 Score = 165 bits (182), Expect = 1e-38 Identities = 176/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 |||||||||| || ||||||||||||| ||||| ||| |||||| |||||| ||||||| Sbjct 88374733 GGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTC 88374790 Query 68 AAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGA 126 | | || ||||||||| | ||||||||||||| ||||| | ||||||| Sbjct 88374791 ATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCG 88374850 Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 |||| |||| ||| | | || | ||| |||||||||||||||||| |||| | Sbjct 88374851 CCTGCCGGCGTAGGGTAGACACAAGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGG 88374910 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 88374911 ACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 88374956 >seq949 Length=131347 Score = 116 bits (128), Expect = 6e-24 Identities = 184/261 (70%), Gaps = 32/261 (12%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 62744 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 62687 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 62686 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 62627 Query 120 ACCCGG--ACCTGTCGGCCAA------------------------GGT-GATAGACTCGT 152 |||| | ||| || || | ||| ||| || | Sbjct 62626 ACCCCGCTGCCT-TCCGCGTATAGGGGGGGGGGGGGGGGGGGGGGGGTAGATCCACAAGC 62568 Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||| |||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 62567 TGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTT 62508 Query 213 ATTGCCTCAAACTTCCGTGGC 233 |||| ||||| || ||||| Sbjct 62507 ATTG-CTCAATCTCGGGTGGC 62488 >seq1 Length=175656249 Score = 86.0 bits (94), Expect = 9e-15 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 ||||||| || ||||||||||||| ||||| ||| |||||| |||||| ||||||| | | Sbjct 55406797 CAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-CCTCGTTCATG 55406740 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATTACCCGGACCT 129 || ||||||||| | |||||||||||| ||| || | | ||||||| ||| Sbjct 55406739 GGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCT 55406680 Query 130 GTCGGC 135 | |||| Sbjct 55406679 GCCGGC 55406674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751985342580