Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq253 176 9e-42 seq949 147 4e-33 seq1 98.7 2e-18 >seq253 Length=134823679 Score = 176 bits (194), Expect = 9e-42 Identities = 170/217 (78%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 88374948 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 88374890 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | ||| ||||| ||| |||||| | | || | Sbjct 88374889 ACTGACTGGCTCAGCTTGTGTCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCC 88374830 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| Sbjct 88374829 CATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 88374770 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||| ||||| ||| ||||||||||| |||||||||| Sbjct 88374769 TGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCC 88374733 >seq949 Length=131347 Score = 147 bits (162), Expect = 4e-33 Identities = 203/284 (71%), Gaps = 29/284 (10%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 62462 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 62519 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | || ||| Sbjct 62520 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCTTGTGGATCT 62579 Query 191 -----------------------CCTTGGC-CGGAAGGT--CTGGGTAATCTTGTTAAAC 224 ||| | ||||||| | |||||| | | || | Sbjct 62580 ACCCCCCCCCCCCCCCCCCCCCCCCTATACGCGGAAGGCAGCGGGGTAACCCGTTGAACC 62639 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | ||||| ||||||| | | |||||||||||| | | | |||||||||| || ||||| Sbjct 62640 CCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAA 62699 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| ||||| ||| ||||||||||| |||||||||||||||| Sbjct 62700 GTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 62743 >seq1 Length=175656249 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||||||| Sbjct 55406674 GCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATT 55406733 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||||| ||| Sbjct 55406734 ATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTC 55406793 Query 316 CCTG 319 |||| Sbjct 55406794 CCTG 55406797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947180942336