Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 244 3e-62 seq808 210 7e-52 >seq1 Length=175656249 Score = 244 bits (270), Expect = 3e-62 Identities = 140/143 (98%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162059370 AATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 162059311 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 162059310 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 162059251 Query 498 TTCAGAGCACTGGGCAGAAATCA 520 ||||||||||||||||||||||| Sbjct 162059250 TTCAGAGCACTGGGCAGAAATCA 162059228 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 119408849 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 119408790 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||||| |||| Sbjct 119408789 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC 119408743 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||||| |||| |||| | ||||||||||||||||||| | Sbjct 144757739 CTTCTGCTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 144757798 Query 67 GTTTAACAGATGTGCCGCCCCA 88 ||| |||| ||| ||||||| Sbjct 144757799 CTTTGACAGGTGTATCGCCCCA 144757820 >seq808 Length=67000979 Score = 210 bits (232), Expect = 7e-52 Identities = 124/129 (96%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38905158 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 38905099 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 |||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||| Sbjct 38905098 TGTGGTTTCGCTGGACGGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCG 38905039 Query 403 TCACTAATT 411 ||||||||| Sbjct 38905038 TCACTAATT 38905030 Score = 105 bits (116), Expect = 2e-20 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 13 CTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAA 72 ||| || |||| |||||| |||| |||| | ||||||||||||||||||| | ||| | Sbjct 35110558 CTCCACGGGAGGTTTCTGGCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACGCTTTGA 35110499 Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| ||| ||||||||| ||||||||||||||||| |||| Sbjct 35110498 CAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTC 35110458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635167099776