Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq687 96.9 6e-18 seq253 80.6 4e-13 >seq687 Length=33419797 Score = 96.9 bits (106), Expect = 6e-18 Identities = 103/132 (78%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 5181842 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 5181785 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 5181784 GGAGCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-CGCCT 5181726 Query 121 GAACGGGGTGAT 132 ||||| | ||| Sbjct 5181725 AAACGGAGCGAT 5181714 >seq253 Length=134823679 Score = 80.6 bits (88), Expect = 4e-13 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 44 CTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTA 103 ||| |||| || || || |||| ||||||||||| |||||||| ||||||||||||| Sbjct 129655732 CTGGCTGAGGAGCCACTGGAGCGAGGCTACCATCTGTGGGATTATGACTGAACGCCTCTA 129655791 Query 104 AGTCAGAATCCATGCCAGAACGGGGTGAT 132 ||||||||||| ||| ||||| | ||| Sbjct 129655792 AGTCAGAATCC-CGCCTAAACGGAGCGAT 129655819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819184032768