Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 5e-15 seq253 86.0 2e-14 >seq1 Length=175656249 Score = 87.8 bits (96), Expect = 5e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 76823652 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCTGAAACTGAACC 76823595 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/123 (74%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 ||||||||| | |||||||||||| | ||||||||||||||||||||||||| | Sbjct 139686324 GTTACCCGTGGTCACCATGGTAGGCACAGACAGTACCATCGAAAGTTGATAGGGCAGACA 139686383 Query 219 TTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCAC 276 || ||||| | |||||| | | || | |||||| | | | ||||| || |||| Sbjct 139686384 TTCGAATGGGTCGTCGCCGCCGCGGGGGCGTGCGATCGGCTCCAGGTTATCTAGAGTCAC 139686443 Query 277 CAA 279 ||| Sbjct 139686444 CAA 139686446 >seq253 Length=134823679 Score = 86.0 bits (94), Expect = 2e-14 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 39333233 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 39333283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510369610752