Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq450 104 2e-17 seq1 86.0 5e-12 seq253 82.4 6e-11 >seq450 Length=100941466 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| |||||| | | || || ||||||||||| |||||||||| Sbjct 88061866 TGGAGCGGTTCAGTCAGGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGA 88061925 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| ||| | || || || ||||||||| ||||||| || || ||||| Sbjct 88061926 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACATACAT 88061980 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || ||| ||||| || || || ||||| | ||||||||| |||| | | Sbjct 88060533 ATGAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATCTTCCCCATCCAGTACCACG 88060592 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 | || |||| |||||||| ||||| || || ||||||||||||| ||||||||| Sbjct 88060593 ACATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 88060647 >seq1 Length=175656249 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | || || ||||| || | Sbjct 174295754 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 174295813 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || ||||| || |||||||||||||| ||||| || |||||||| Sbjct 174295814 CCCGGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGCTCCAGGTA 174295873 Query 66460 GATGGCGAACGAGCCC 66475 |||||| || ||||| Sbjct 174295874 GATGGCAAA--AGCCC 174295887 >seq253 Length=134823679 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| ||||| ||| ||||| Sbjct 117707181 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATCCTCATCGAGAAC 117707240 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | || || || || ||||||| Sbjct 117707241 GTTCACTCCGAGATGTACAGCTTGCTTATAGACACTTACATCA 117707283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558251135680