Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1943 84.2 9e-11 seq1931 84.2 9e-11 >seq1943 Length=1090 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 349085 TCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAG 349144 || || |||||||||| |||||||| ||||||||||||| || ||||| | ||||| Sbjct 307 TCTTTCAGTCTGGGCACCCCCAGGGTGACGTTCTTGGCCGACACCCCGGCGTAATGGAAC 366 Query 349145 GTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACC 349204 || | || |||| ||| ||| ||| || || | | ||||| | || | ||| ||| Sbjct 367 GTGTTCAGCGTCATCTGGGTGGCGGGTTCACCAAGGGACTGGGCGGCCAATGCGCCCACC 426 Query 349205 ATCTCGCCGGG 349215 ||||| ||||| Sbjct 427 ATCTCACCGGG 437 >seq1931 Length=1109 Score = 84.2 bits (92), Expect = 9e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 349085 TCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAG 349144 || || |||||||||| |||||||| ||||||||||||| || ||||| | ||||| Sbjct 804 TCTTTCAGTCTGGGCACCCCCAGGGTGACGTTCTTGGCCGACACCCCGGCGTAATGGAAC 745 Query 349145 GTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACC 349204 || | || |||| ||| ||| ||| || || | | ||||| | || | ||| ||| Sbjct 744 GTGTTCAGCGTCATCTGGGTGGCGGGTTCACCAAGGGACTGGGCGGCCAATGCGCCCACC 685 Query 349205 ATCTCGCCGGG 349215 ||||| ||||| Sbjct 684 ATCTCACCGGG 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084684147249576