Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1710 122 1e-25 seq1266 80.6 4e-13 seq5925 77.0 5e-12 >seq1710 Length=2992603 Score = 122 bits (134), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 |||| || ||||||| |||| ||||| ||| |||||| |||||| |||| || | | Sbjct 2391786 GGACTTAATCAACGCACGCTT-ATGACCCGCACTTACTGGGAATT-CCTCATTCATGGGG 2391729 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || |||||||||| | |||||||||| || ||||| | ||||||| |||| | Sbjct 2391728 AAGAATTGCAATGCCCGATCCCCATCATGAATGGGCTTCAACGGGTTACCCGCGCCTGCC 2391669 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 || ||| | || | ||| |||| | ||||||||||||||| | |||||| Sbjct 2391668 AGCGGAGGGTAGGCACAAGGTGAGCTAGTCAGGGAGGCGCGCGTGCGGCCCCGGACATCT 2391609 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||| ||||| || Sbjct 2391608 AAGGGCATCACAGACCTGTTATTG-CTCAATCT 2391577 >seq1266 Length=1988549 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||| | || || ||||||| |||||||||||||||||||||||||||||| |||| Sbjct 970293 CAGTGTAGTGTGCCTGTGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 970235 Query 222 AACT 225 | || Sbjct 970234 ATCT 970231 >seq5925 Length=237 Score = 77.0 bits (84), Expect = 5e-12 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||||||||| || ||||| ||||||| |||| ||| || ||| |||| ||||| Sbjct 1 CAAAGGGCAGGGACTTAATCAACACGAGCTT-TTGACCCGCACTGACTGGGAA-TTCCTT 58 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC-GATGAAATTTCAAAGATTACC 122 ||| | | | ||||||||| ||||||||||| ||| ||| | || ||||| Sbjct 59 GTTCATGGGGAGGAATTGCAATCCCTGATCCCCATCACAAATGGGATTCAACAGGTTACC 118 Query 123 CGGACCTG 130 || ||||| Sbjct 119 CGCACCTG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751891234950