Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2888 161 2e-37 seq3365 125 1e-26 seq2172 113 7e-23 seq1710 100 5e-19 seq1266 80.6 4e-13 >seq2888 Length=1701689 Score = 161 bits (178), Expect = 2e-37 Identities = 180/233 (77%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| | | |||||||| |||||||||||| |||| |||| || | |||||| | Sbjct 768434 CCCAGA-CGTTTAAGGGCACCACAGACCTGTTCTTGC-TCAATCT-CAGGTGGCTGAATA 768490 Query 96 CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT--AGTCGA--TGGGGCTATTTAGCA 151 ||| | |||||||||||||| | | ||||||| || | || ||||||| |||| Sbjct 768491 CCACTTGTCCCTCTAAGAAGTTGGACGCCAACCACTCAGGGGTCTTGTGGCTATT-AGCA 768549 Query 152 GGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211 | | |||||| | |||| || || |||| ||| ||||||||||||||||||||||| Sbjct 768550 TGCCAGAGTCTCGCTTGTTACCGCAAATAACGAGATAAATCACTCCACCAACTAAGAACA 768609 Query 212 GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 |||||||| ||| |||||| |||| |||||||||| ||| |||||| |||| Sbjct 768610 GCCATGCATCACTACCCATGGAATTGAGAAAGAGCTCTCAGTCTGTCAACCCT 768662 >seq3365 Length=4414095 Score = 125 bits (138), Expect = 1e-26 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 || |||||||||||||||| |||||||||| ||||||||||||||||| |||| || || Sbjct 3787090 TCATTCGTTATCGGAATTAGCCAGACAAATTGCTCCACCAACTAAGAACAGCCACGCGCC 3787149 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||| | |||||||||| |||||||||| Sbjct 3787150 ACCACCCACAGAACCCAGAAAGAGCTCTCAATCTGTC 3787186 >seq2172 Length=1602049 Score = 113 bits (124), Expect = 7e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| ||||| ||||||||||||||||||| |||||||| ||||||| |||||||| Sbjct 298730 GTCTCGTTTGTTATTGGAATTAACCAGACAAATCGCTCCACCAGCTAAGAATGGCCATGC 298671 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||| |||| | |||||| | ||| | |||| Sbjct 298670 ACTACCACCCACGGAATTGATAAAGAGGTCTCAGTTTGTC 298631 >seq1710 Length=2992603 Score = 100 bits (110), Expect = 5e-19 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||| | ||||||||||||||| | |||||||||||||||||||||||||||||| || Sbjct 2391641 GTCAGGGAGGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 2391583 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 ||| | || ||||| | |||| | |||||||||||| Sbjct 2391582 CAATC-TCGGGGGGCTGAACGCCACTTGTCCCTCTAAGA 2391545 >seq1266 Length=1988549 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||| | || || ||||||| |||||||||||||||||||||||||||||| |||| Sbjct 970293 CAGTGTAGTGTGCCTGTGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 970235 Query 77 AACT 80 | || Sbjct 970234 ATCT 970231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796684755330