Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2475 412 6e-113 seq2463 340 3e-91 seq1549 158 2e-36 seq3278 154 3e-35 seq677 141 2e-31 seq205 91.5 3e-16 >seq2475 Length=1097 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | |||| ||||||||||||||||||||||||||||||||| Sbjct 995 TACTAGGTTGAATTACTATCGCGGCG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 937 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 936 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 877 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 876 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 817 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 816 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 757 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 756 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 704 >seq2463 Length=17948 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 603 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 544 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 543 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 484 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 483 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 424 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 423 CTGTGGTAACTTTTCTGCCACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGATCGTGAGG 364 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 363 CCCCGCTTTCACGGTCTGTATTC 341 >seq1549 Length=10300 Score = 158 bits (174), Expect = 2e-36 Identities = 136/167 (81%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 |||||||||||| || | ||||||||||||||| ||||| | ||||| ||| | |||| Sbjct 7437 GGTCTAAACCCACCTTAAGTTCCCTATTAGTGGATGAACGACCCAACCCTTGGTGGATTC 7496 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| | |||| ||||||||| ||| ||||||||||||||||| || | | ||||| Sbjct 7497 TGCTTCAGGATGACGGGAAGAGCCAGCATGGAAGGATCAAAAAGCAATGTTGATGTGAAC 7556 Query 185 GCTTGGCTGCCACAAGCCAGTTAT-CCCTGTGGTAACTTTTCTGGCA 230 ||||| | || ||| |||||||| ||| |||||||||||||| || Sbjct 7557 ACTTGGATACCCCAAACCAGTTATCCCCCATGGTAACTTTTCTGACA 7603 >seq3278 Length=1645786 Score = 154 bits (170), Expect = 3e-35 Identities = 137/174 (79%), Gaps = 13/174 (7%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| |||||||||||||| | ||| ||||||| |||||||| Sbjct 1422064 TCATCAGTAGGGTGAAACTAACCTGTCTTACGACACTCTAAACATAGCTCACG------- 1422116 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||| ||| ||||||| |||| ||||| | |||||||| | Sbjct 1422117 ------GGTGAACAATCCAACACTTGGTGAATTCTACTTCACTATGACAAGAAGAGCCAA 1422170 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 || ||||||||||| || || |||||||||||||||||||| |||||||||| Sbjct 1422171 CACTGAAGGATCAAAGAGTGACATCGCTATGAACGCTTGGCTGGCACAAGCCAG 1422224 >seq677 Length=7851789 Score = 141 bits (156), Expect = 2e-31 Identities = 80/81 (99%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4534449 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4534508 Query 91 TTAGTGGGTGAACAATCCAAC 111 ||||||||||||||||||||| Sbjct 4534509 TTAGTGGGTGAACAATCCAAC 4534529 >seq205 Length=633746 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| Sbjct 588220 ATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 588161 Query 150 ACATCGAA 157 |||||||| Sbjct 588160 ACATCGAA 588153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854272438080