Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1710 145 1e-32 seq1266 80.6 5e-13 seq5925 78.8 2e-12 >seq1710 Length=2992603 Score = 145 bits (160), Expect = 1e-32 Identities = 183/245 (75%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| | |||| || | ||||| |||||||||||||||||| Sbjct 2391545 TCTTAGAGGGACAAGTGGCGTTCAGCCCCCCGA-GATTGAG-CAATAACAGGTCTGTGAT 2391602 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC-CAACGAGTTCATCAC 191 |||||||||||| | ||||||||||||||| | ||||| ||| || | || | | | Sbjct 2391603 GCCCTTAGATGTCCGGGGCCGCACGCGCGCCTCCCTGAC-TAGCTCACCTTGTGCCTACC 2391661 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || || || ||| |||||| | | || | | || || ||||||| | ||||||| Sbjct 2391662 CTCCGCTGGCAGGCGCGGGTAACCCGTTGAAGCCCATTCATGATGGGGATCGGGCATTGC 2391721 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| || | | | || ||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 2391722 AATTCTTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCGTGCGTTGATTA 2391781 Query 312 CGTCC 316 |||| Sbjct 2391782 AGTCC 2391786 >seq1266 Length=1988549 Score = 80.6 bits (88), Expect = 5e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| ||||||| || || | |||| Sbjct 970231 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCCACAGGCACACTAC 970289 Query 166 ACTG 169 |||| Sbjct 970290 ACTG 970293 >seq5925 Length=237 Score = 78.8 bits (86), Expect = 2e-12 Identities = 133/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 |||| |||||| | ||| |||| | |||||| |||| | || | || | || Sbjct 193 CCCTCAGATGTCCGGGGTTGCACACATGCTACATTGACTGGCTCAGCTTGTGTCTACTCT 134 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || | |||| |||||| || | || | | | ||| ||||||| | ||||||| Sbjct 133 CTGCTAGCAGGTGCGGGTAACCTGTTGAATCCCATTTGTGATGGGGATCAGGGATTGCAA 74 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || | | | | ||| |||||| || ||| || ||| |||| ||| || |||||||| | Sbjct 73 TTCCTCCCCATGAACAAGGAATTCCCAGTCAGTGCGGGTCAAAAGCTCGTGTTGATTAAG 14 Query 314 TCCCTGCCCTTTG 326 ||||||||||||| Sbjct 13 TCCCTGCCCTTTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947058583040