Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2475 713 0.0 seq724 235 2e-59 seq2463 105 2e-20 seq916 89.7 2e-15 >seq2475 Length=1097 Score = 713 bits (790), Expect = 0.0 Identities = 482/534 (90%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 670 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 611 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 610 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 551 Query 127 GGCCCG-CGAAG---GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTC 181 |||||| ||| | | |||| |||| || | || ||||| || ||||| | Sbjct 550 GGCCCGGCGAGGCCGGGCCTTGGAGCCAAAAGGAGGGGCGGTGCC--CCGCTTCCGACCC 493 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| |||||||||||||||||||||| | ||||||| Sbjct 492 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGGA-GGCTCCC 434 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 374 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 373 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 314 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 254 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 194 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 193 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 140 >seq724 Length=9359815 Score = 235 bits (260), Expect = 2e-59 Identities = 172/199 (86%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA---GTCAAGCT 293 |||||||||||||||||||||||| ||| |||||| | |||||| |||||||| Sbjct 1682512 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACA-----GCACTAGACAAGTCAAGCT 1682458 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||| ||||||| |||||||| ||| || |||||||||||| || Sbjct 1682457 CAACAGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCTGTTGCCCTGGCTGTGGTTTTGC 1682398 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | || ||||| || ||||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 1682397 TTGACAGTAGGTAAGGACAGTGGGAATTTTGTTCATCCATTCATGCGCGTCACTAATTAG 1682338 Query 414 ATGACGAGGCATTTGGCTA 432 ||| |||||||||||||| Sbjct 1682337 TTGATGAGGCATTTGGCTA 1682319 Score = 113 bits (124), Expect = 1e-22 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 || ||||||||||||||||||||| || |||||| | |||| ||||||||||||||||| Sbjct 1681213 CTGAAGAGAGTCATAGTTACTCCCACCATTTACCTGTGCTTCATTGAATTTCTTCACTTT 1681154 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| || ||||||||||||||||||||| | |||||| Sbjct 1681153 GAC--TC--AGCACTGGGCAGAAATCACATCACATCAACA 1681118 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| |||| || |||| |||| | ||||||||||||||| ||| | Sbjct 1765039 CTTCTGCTCCGTGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACG 1764980 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 ||| |||| ||| || |||||| ||||||| Sbjct 1764979 CTTTGACAGGTGTACCACCCCAGTCAAACTC 1764949 >seq2463 Length=17948 Score = 105 bits (116), Expect = 2e-20 Identities = 100/128 (78%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 307 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 248 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| | |||| |||||| | Sbjct 247 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC-----CCCGGAGC 193 Query 127 GGCCCGCG 134 || |||| Sbjct 192 GGGTCGCG 185 >seq916 Length=45932 Score = 89.7 bits (98), Expect = 2e-15 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||||||||||||||| ||||||||||| || |||||||| || ||||||| |||||| Sbjct 34966 GACAGTGGGAATCTCGTTCATCCATTCATGTGCATCACTAATCAGGTGACGAGACATTTG 35025 Query 429 GCTA 432 |||| Sbjct 35026 GCTA 35029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634955864640