Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cuculus_20canorus_20[refseq_20GCF_5F000709325.1_202014-06-17] 14,930 sequences; 1,153,894,225 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq188 111 1e-19 seq1282 95.1 1e-14 seq1674 91.5 1e-13 >seq188 Length=444545 Score = 111 bits (122), Expect = 1e-19 Identities = 124/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || || || || ||||| ||||| |||| ||||| || Sbjct 224525 GGTGTACTCCACTATTTCCGTACAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTG 224466 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| | |||||||| | |||||| || ||||||||||| || Sbjct 224465 GTTGCTCTTGCGGTTGCAGGAGTCCTTGTAAAGCATGTAGGGCGTGCCGGTCTCTGTCTG 224406 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 ||||||||||| |||| || ||||| || | ||||||||| Sbjct 224405 AGACTCAATGATTGCGTACC--AGAGCTGCTGGGCCTTCACC 224366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 222627 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCCTT 222568 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || | ||| |||||||| |||||||| |||||||| ||||| || Sbjct 222567 CCCGGTGTTCTTCTTTAGGTCAAGGAACTCGAAGATGTCCAAGTGCCATGGCTCCAGATA 222508 Query 66460 GATGGCGAACGAGCCC 66475 |||||| || ||||| Sbjct 222507 GATGGCAAA--AGCCC 222494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || |||||||||||||| || || || || |||||||| ||| ||| || | | Sbjct 230665 ACCTGGAACTCGCCGGAGAGGACTCGGCGCGTGTAGATGTTACTGGTGTAGGGCTCTATG 230606 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAG 65537 ||||| ||||||| || || ||||||||||| ||||| |||||||||| Sbjct 230605 GATTCGTTGTTGCCCAGGATCTGGGCAGTAGAAGCAGTCGGCATGGGAG 230557 >seq1282 Length=7422214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 510705 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 510764 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 510765 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 510821 >seq1674 Length=4410459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || ||||||||||| |||||||||||||||||||| ||| | || || || |||||| Sbjct 1957174 GAAGCCCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGTAC 1957115 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| ||||||| || || ||||| Sbjct 1957114 AGTCTTCTCATTGACACCTACAT 1957092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397495658775200