Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1317 233 6e-59 seq1813 143 9e-32 seq2472 123 8e-26 seq1925 84.2 7e-14 seq2518 80.6 9e-13 >seq1317 Length=1981430 Score = 233 bits (258), Expect = 6e-59 Identities = 168/195 (86%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| ||| |||||| | | | |||||||||||||||| Sbjct 409031 CTCCCACTTATTCTACACCTCTCGTGTCTCTTCACAGCGCCAGGCTAGAGTCAAGCTCAA 409090 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | Sbjct 409091 CAGGGTCTTCTTTCCCCGCTGGTGCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 409150 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||| |||||||| ||||| | |||||||||||||| || Sbjct 409151 ATAGTAGGCAGGGACAGCGGGAATCT--------CATTCGTCTGCGTCACTAATTAGCTG 409202 Query 417 ACGAGGCATTTGGCT 431 ||||||||||||||| Sbjct 409203 ACGAGGCATTTGGCT 409217 >seq1813 Length=91455 Score = 143 bits (158), Expect = 9e-32 Identities = 148/195 (76%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| || || ||| | | |||| | ||||||||||| Sbjct 66181 CTCCCACTTATTCTACACCTCTCGCATCTCTTAACAGTGCCAGACTGGGGTCAAGCTCAA 66122 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||| || || | ||||||| || |||||| ||||| ||||||||||||||| Sbjct 66121 CAGGGTCTCCTGCCCTCACTGATTCTGCTGAGCCCGGTCCCTGGGCTGTGGTTTCGCT-- 66064 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||||||||| ||||| |||||| || || || | |||||| || | || Sbjct 66063 ------GTTAGGGACAGCGGGAACCTCGTTCATTCACGCACCTGTGTCACTCATCGGGTG 66010 Query 417 ACGAGGCATTTGGCT 431 || |||| ||||||| Sbjct 66009 ACAAGGCGTTTGGCT 65995 >seq2472 Length=380690 Score = 123 bits (136), Expect = 8e-26 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 || || |||||||| |||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 112650 TCACTGGATAGTAGGTAGGGACAGTGGAAATCTCGTTCATCCATTCATGCGCGTCACTAA 112591 Query 410 TTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| || Sbjct 112590 TTAGATGACGAGGCATTTGGTTA 112568 >seq1925 Length=1692890 Score = 84.2 bits (92), Expect = 7e-14 Identities = 139/198 (70%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 241 CACTTATTCTACACCTCTCAAGT--CAT--TTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||| ||| |||||| | || | | |||||| | | |||||||||||| Sbjct 58923 CATTTATGCTAGACCTCTGATGTGTCTTCCTTCACAGAACCAGACTAGAGTCAA------ 58870 Query 297 CAGGGTCTTCTTTCCCCGCTGATT--CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| ||||| |||||| | || || | |||| |||| ||||||| |||| ||| Sbjct 58869 CAGTGTCTTTTTTCCCTATTTTTTTTCCCCTGAGCCTGTTCACTTGGCTACAGTTTTGCT 58810 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || |||| |||||||||||||||| || || || ||||| | | ||| | | | | Sbjct 58809 GGACAGTAAGTAGGGACAGTGGGAATTTCATTGATATATTCAGGTACATCAATCACTGGG 58750 Query 415 TGACGAGGCATTTGGCTA 432 ||| | ||||||||||| Sbjct 58749 TGATGCAGCATTTGGCTA 58732 >seq2518 Length=1451 Score = 80.6 bits (88), Expect = 9e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 1398 TAAGAGAGTCATAGTCACTCACGCCGTTTACCCGCGCTTCATTGAATTTCTTCA 1451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635007193568