Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2626 95.1 2e-17 seq1476 86.0 1e-14 seq903 86.0 1e-14 >seq2626 Length=3002167 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| |||| || |||| || || | Sbjct 2883068 GTACGAGAGGAACCGCAGG-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 2883125 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| |||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 2883126 GGCGCGAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC 2883179 >seq1476 Length=1991493 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||| |||| | ||||| | ||| |||| || |||| || || | Sbjct 392194 GTACGAGAGGACCCGCAGG-TTCAGCCCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 392137 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| |||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 392136 GGCGCGAGGCTACCATCTGCGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC 392083 >seq903 Length=1157830 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||| |||| || |||| || || | Sbjct 983154 GTACGAGAGGAACCACAGG-TTCAGACCCCT-GGTGCGTGCGCTTGGCTGAGGAGCCACT 983097 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| ||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 983096 GGCGCGAGGCTACCATCTGTGGGCTTATGACTGAACGCCTCTAAGTCAGAATCC 983043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819106426624