Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Egretta_20garzetta_20[refseq_20GCF_5F000687185.1_202014-05-09] 11,791 sequences; 1,206,501,934 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq737 107 2e-18 seq1389 100 2e-16 seq1587 91.5 1e-13 >seq737 Length=313774 Score = 107 bits (118), Expect = 2e-18 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || ||||| || ||||| || ||||| ||||| |||| ||||| || Sbjct 289356 GGTATATTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 289415 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 289416 GTTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCCGTCTG 289475 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| |||| || ||||| || | ||||||||| Sbjct 289476 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 289515 Score = 102 bits (112), Expect = 6e-17 Identities = 107/137 (78%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| |||||||| ||||||||||| ||||||| || | ||||| ||||| || | Sbjct 290607 CATAAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGCTCTTCTTT 290666 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| |||||| || ||||||| Sbjct 290667 TCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGT 290725 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 290726 AGATGGCAAA--AGCCC 290740 >seq1389 Length=9232658 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| |||||| Sbjct 5784699 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAT 5784640 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||||||||||||||| | ||||| || || ||||||| Sbjct 5784639 GTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 5784597 >seq1587 Length=5570568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| ||||||||||| |||||||||||||| ||||| ||| | || ||||| |||||| Sbjct 1715093 GAGGCTCGTTGTTTCTATGGCTTCCAGATTGCTATGGAAAATATACATTCGGAAATGTAC 1715152 Query 61348 AGTGTTCTCATCGATACGTACAT 61370 ||| |||| || || || ||||| Sbjct 1715153 AGTCTTCTTATTGACACCTACAT 1715175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397510868360240