Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq51545 165 1e-38 seq39900 132 8e-29 seq4828 118 2e-24 seq15872 104 4e-20 seq30976 80.6 4e-13 >seq51545 Length=200 Score = 165 bits (182), Expect = 1e-38 Identities = 152/188 (81%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || Sbjct 186 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 128 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGT 133 ||| | || |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 127 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGG 69 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||| |||||| | | |||||||||||||||||||||||||||||||| Sbjct 68 GGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 9 Query 191 TCACTCCA 198 || ||||| Sbjct 8 TCGCTCCA 1 >seq39900 Length=87328 Score = 132 bits (146), Expect = 8e-29 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 ||||||| ||||||||||||||||||||||||| ||| ||| || || |||||| | | Sbjct 40598 CCCAGAA-ATCTAAGGGCATCACAGACCTGTTAGTGC-TCAGTCT-CCGGTGGCTGAATG 40542 Query 96 CCAATAGTCCCTCTAAGAAGCCAGCCACCAAC-CATAGTCGATGGGGCTATTTAGCAGGT 154 ||| | ||||||| |||||| | || || | | ||| |||||| | Sbjct 40541 CCACTTGTCCCTCCAAGAAGTTGTATGCTGACTCAGGGGTCACATAACTAGTTAGCATGC 40482 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 | ||||| ||||||| | ||||||||||||||||| |||||||||||||||| || | Sbjct 40481 CATAGTCTCATTCGTTACCAGAATTAACCAGACAAATTGCTCCACCAACTAAGAATGGTC 40422 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| |||||||| |||| |||| ||| | ||| ||| || Sbjct 40421 ATACACTACCACCCACAGAACTGAGAACGAGTTCTCACTCTCTC 40378 >seq4828 Length=4256 Score = 118 bits (130), Expect = 2e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||||| ||||||||||||||||||| ||||||||||||| || || |||| Sbjct 119 GTCTCATTCGTTATTGGAATTAACCAGACAAATCGCTCCACCAACTAACAATGGTTATGC 178 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| ||| |||||||||| |||| | ||| Sbjct 179 ACCACCACCCATGGAACTGAGAAAGAGCTCTCAACCAGTC 218 >seq15872 Length=47854 Score = 104 bits (114), Expect = 4e-20 Identities = 71/79 (90%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || |||||||||| |||||||||||||||||||||||||||||||||||| ||||| || Sbjct 42406 AATCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAG 42465 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| ||||| Sbjct 42466 AAAGAGCTCTCA--CTGTC 42482 >seq30976 Length=91580 Score = 80.6 bits (88), Expect = 4e-13 Identities = 78/100 (78%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| ||||| |||||| ||||||||||| |||| |||||||| ||||| | Sbjct 31570 GTCTTGTTTGTTATTGGAATTTACCAGACAAATTGCTCC----ACTAAGAATGGCCAGCC 31515 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || || |||||| || |||||||||| ||||||| || Sbjct 31514 ACGACTACCCATGAGATAGAGAAAGAGCTCTCAATCTTTC 31475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796316026419