Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurypyga_20helias_20[refseq_20GCF_5F000690775.1_202014-05-13] 62,699 sequences; 1,088,019,637 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14636 118 8e-22 seq28635 93.3 3e-14 seq32563 89.7 4e-13 seq60581 87.8 1e-12 >seq14636 Length=6855 Score = 118 bits (130), Expect = 8e-22 Identities = 125/161 (78%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || || |||| ||| ||||| |||||||||| ||||| ||| Sbjct 1149 GTGTACTCCACGATCTCCGTACACAAATTGCTGCATTTGATGGTGCCCAGGTTCTGCTGA 1208 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| || ||||| | || ||||||| ||||||||| ||||||||||| ||| Sbjct 1209 TTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCCGTCTGG 1268 Query 66170 GACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || ||||||||||| | || ||||| || | ||||||||| Sbjct 1269 GATTCAATGATGGCATACC--AGAGCTGCTGGGCCTTCACC 1307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| ||||| ||| || ||||| || ||||||||||| |||| || || | || || Sbjct 2875 TTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCGCG 2934 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 || || || | ||| || || |||||| |||||||| |||||||| |||||| Sbjct 2935 CTGTTCTTCCTTCCCGGTGTTCTTCTTCAAGTCCAGGAACTCGAAGATGTCCAAATGCCA 2994 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCC 66475 || ||||||||||||||||| ||||| Sbjct 2995 CGGCTCCAGGTAGATGGCGAA--AGCCC 3020 >seq28635 Length=94282 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| ||||||||||| |||||||||||||| ||||||||| | || || || |||||| Sbjct 93299 GAGGCTCGTTGTTTCTATGGCTTCCAGATTGCTATGGAGAATATACATTCAGAAATGTAC 93240 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGA 61376 ||| |||| || || || ||||| | ||| Sbjct 93239 AGTCTTCTTATTGACACCTACATTAAGGA 93211 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| || || || || || ||||| | ||||||||| |||| | || Sbjct 94197 GAACCGCTGCTGCGGGACAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 94138 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || |||||||||||||||| |||||||| Sbjct 94137 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCAGAGGAGGT 94085 >seq32563 Length=19397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| |||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 6528 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 6587 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||| ||||| || ||||| ||||||||||| | || ||||| || ||||||| Sbjct 6588 TCCTCATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTGATCGACACCTACATCA 6644 >seq60581 Length=975 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| || | |||||||||||| | ||||||| || | ||| | |||||||| Sbjct 120 TCGTACGGCCCTTGCTCCTTGGCAAGCTCGCAGCTGGCTTCCAACGCGCCGTAATAAATG 179 Query 65741 GTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CAT 65799 ||||||||||| | | || || | ||||| ||||||| | || |||| ||| Sbjct 180 GTCTCGAAAATCTGCTGGTTGAGGAGCTGCGCCTCGGGGCTCTCG-AAGGGGTACCTCAT 238 Query 65800 CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATT 65859 ||||| || | ||| ||||| || || || || || ||||||||||| || || || Sbjct 239 CAGGATGAAGGCGTCTGCCAGCCCCTGCACCCCGATGCCGATGGGACGGTGGCGTCTGTT 298 Query 65860 GGAACGT 65866 ||| ||| Sbjct 299 GGAGCGT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397264200773360