Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falco_20cherrug_20[refseq_20GCF_5F000337975.1_202013-02-05] 5,863 sequences; 1,174,811,715 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 1e-14 seq431 89.7 4e-13 >seq12 Length=3827242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| ||||||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 3380755 TGGCACGTTTCAGTCAGGAGGTGCAGATCCCAGAAGCACGTTGTTTCTATGGCTTTCAGA 3380814 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||| ||||| || ||||| ||||||||||| | || || || || ||||||| Sbjct 3380815 TTCTCATTGAGAACGTTCACTCAGAGATGTACAGCCTGCTGATAGACACCTACATCA 3380871 >seq431 Length=331394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| | || || || | ||||| ||||| || | Sbjct 63782 CATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 63841 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || ||||||||||| || ||||||||| ||||||| Sbjct 63842 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATATCCAAATGCCATGGCTCCAGGT 63900 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 63901 AGATGGCAAA--AGCCC 63915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 58857 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 58916 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | |||||| || || | || |||| || Sbjct 58917 GTCTCAAAAATCTGCTGGTTCAAGCGC-TGGGCCTCAGGACTTTCAAAAGG-GTACCTCA 58974 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| | |||| || ||||| || || || ||||| || ||||||||||| || | Sbjct 58975 TCAAAATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 59034 Query 65859 TGGAACGT 65866 |||||||| Sbjct 59035 TGGAACGT 59042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539591654320