Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1051 342 9e-92 seq868 342 9e-92 seq359 187 4e-45 seq6 159 6e-37 seq568 141 2e-31 seq23 136 7e-30 seq181 134 2e-29 >seq1051 Length=6438 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 1491 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1550 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1551 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1610 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1611 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1670 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1671 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1730 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 1731 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 1784 >seq868 Length=8894 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 5335 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 5394 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5395 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 5454 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 5455 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 5514 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 5515 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 5574 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 5575 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 5628 >seq359 Length=31019 Score = 187 bits (206), Expect = 4e-45 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||| Sbjct 30146 GAATTCTGCTTCACAATGATAGGAAGAGCCGACACCGAAGGATCAAAAAGCGACGACGCT 30205 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 30206 ATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 30265 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||| ||| ||||| | |||||| ||| |||||||| Sbjct 30266 TTAAAACCCAAAAAGCCAGAAGGCTCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 30321 >seq6 Length=157563209 Score = 159 bits (176), Expect = 6e-37 Identities = 161/204 (79%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||| |||| | |||| |||| | | ||||| |||||||||| | ||||| Sbjct 153305680 TCACCAGTAGG-TAAAGTCACCCTGCCTCACAAAGATCTAACCCCAGCTCACATCCCCTA 153305738 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | | || | | |||||||| |||| |||||||||||| ||||||| ||||||| | Sbjct 153305739 TCACAGG-TCACCAATCCAATGCTTGATGAATTCTGCTTCCCAATGATAG-AAGAGCCAA 153305796 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | |||||||||||| ||||| | ||| ||||| |||||||||||||||||||| || | Sbjct 153305797 TTTGGAAGGATCAAAAGGCAACATTGCTGTGAACACTTGGCTGCCACAAGCCAGTCATTC 153305856 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 | ||| |||||| |||||||||| Sbjct 153305857 C-CTGGAAACTTTCCTGGCACCTC 153305879 >seq568 Length=17275 Score = 141 bits (156), Expect = 2e-31 Identities = 90/98 (92%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| || ||||||||||||||||||| | ||||||||||||| ||||||||||||||| Sbjct 14030 ATCAGGAGTGTAAAACTAACCTGTCTCACGGCGGTCTAAACCCAACTCACGTTCCCTATT 13971 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||| |||| | |||||||||||| Sbjct 13970 AGTGGGTGAACAATCCAATGCTTGCTGAATTCTGCTTC 13933 >seq23 Length=14943019 Score = 136 bits (150), Expect = 7e-30 Identities = 89/98 (91%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||| |||||||||||| |||||| | ||||||||||||| ||||||||||||||| Sbjct 14936358 ATCAGTAGTGTAAAACTAACCGGTCTCACGGCGGTCTAAACCCAACTCACGTTCCCTATT 14936299 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||| ||| |||| | |||||||||||| Sbjct 14936298 AGTGGGTGAACAATACAATGCTTGCTGAATTCTGCTTC 14936261 >seq181 Length=73694 Score = 134 bits (148), Expect = 2e-29 Identities = 105/124 (85%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||| ||| | ||||| |||| | || ||||||||||||||||||||| |||||||| Sbjct 3176 ACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAAACTGTCTCA 3117 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||| |||||||||||||||||||||||||||||||||||| |||| || Sbjct 3116 CCACGGTCTAAACGCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTGA 3057 Query 121 ATTC 124 |||| Sbjct 3056 ATTC 3053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854216919168