Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficedula_20albicollis_20[refseq_20GCF_5F000247815.1_202013-06-27] 21,428 sequences; 1,118,343,587 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1051 497 3e-138 seq868 320 5e-85 seq6 269 9e-70 seq22 230 8e-58 seq469 165 3e-38 seq662 131 5e-28 seq17749 102 3e-19 seq109 87.8 6e-15 >seq1051 Length=6438 Score = 497 bits (550), Expect = 3e-138 Identities = 457/584 (78%), Gaps = 58/584 (10%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 1818 CTTCTGCTCCACGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 1877 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| || Sbjct 1878 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 1937 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 | || |||| || | ||| |||||||| | |||| | || Sbjct 1938 GCGGCCGGCGCGCGCCGGCCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 1997 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 |||| ||| | ||||| |||||||||| || ||||||||||||||| Sbjct 1998 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGACGGCCG 2056 Query 223 -----------------TTGC--------GCCGAAA-------CGGC-TCCCACTTATTC 249 | || ||||| |||| |||||||||||| Sbjct 2057 GGACGCCGACGGGCGGGTCGCCCCGCGCCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 2116 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| ||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 2117 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 2176 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 2177 CCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 2236 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2237 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 2296 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2297 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCA 2356 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2357 CTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 2400 >seq868 Length=8894 Score = 320 bits (354), Expect = 5e-85 Identities = 357/483 (74%), Gaps = 58/483 (12%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 5662 CTTCTGCTCCACGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 5721 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| |||||||||| |||| | |||| | ||| || Sbjct 5722 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCCCCTGCCGCTGTCCCCGGAGCGGGTC 5781 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 | || |||| || | ||| |||||||| | |||| | || Sbjct 5782 GCGGCCGGCGCGCGCCGGCCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 5841 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 |||| ||| | ||||| |||||||||| || ||||||||||||||| Sbjct 5842 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGACGGCCG 5900 Query 223 -----------------TTGC--------GCCGAAA-------CGGC-TCCCACTTATTC 249 | || ||||| |||| |||||||||||| Sbjct 5901 GGACGCCGACGGGCGGGTCGCCCCGCGCCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 5960 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| ||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 5961 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 6020 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 6021 CCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 6080 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 6081 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGATGAGGCATTTGG 6140 Query 430 CTA 432 ||| Sbjct 6141 CTA 6143 >seq6 Length=157563209 Score = 269 bits (298), Expect = 9e-70 Identities = 178/197 (90%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||| ||||||||| ||| |||||| | | ||||| |||||||||||| Sbjct 124488624 CTCCCACTTATTCTGCACCTCTCATGTCTCTTCACAGTGCCAGACTAAAGTCAAGCTCAA 124488565 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| | Sbjct 124488564 CAGGGTCTTCTTTCCCCACTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGG 124488505 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| |||||||||||| | |||||||| ||||| Sbjct 124488504 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCACATCACTAATAAGATG 124488445 Query 417 ACGAGGCATTTGGCTAC 433 | ||||||||||||||| Sbjct 124488444 ATGAGGCATTTGGCTAC 124488428 >seq22 Length=17374186 Score = 230 bits (254), Expect = 8e-58 Identities = 173/202 (86%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| | | |||||| | || |||||||||||||| Sbjct 3510174 CTCCCACTTATTCTACACCTCTCATGACTCTTCACAGCACCAGATTAGAGTCAAGCTCAC 3510115 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||| ||| | Sbjct 3510114 CAGGGTCTTCTTTCCCTGCTGGTTCTGCCAAGCCCGTACCCTTGGCTGTGGTTTTGCTGG 3510055 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || || |||||||||||||||| ||| |||||||||||| | |||||||||||||| Sbjct 3510054 AT-----ATTGGGACAGTGGGAATCTTGTTCATCCATTCATGCACATCACTAATTAGATG 3510000 Query 417 ACGAGGCATTTGGCTACCTTAA 438 |||||||| ||||||| ||||| Sbjct 3509999 ACGAGGCACTTGGCTA-CTTAA 3509979 >seq469 Length=22038 Score = 165 bits (182), Expect = 3e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 6198 CCTTAAGAGAGTCATAGTTACTCCCACCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 6257 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 6258 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 6298 >seq662 Length=12770 Score = 131 bits (144), Expect = 5e-28 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||| ||||||||| |||||||||| ||||||||||||||| |||||||| |||||| Sbjct 11422 ACCTCAAGAGAGTCTCGGTTACTCCCGACGTTTACCCGCGCTTCATTGAATTTGTTCACT 11363 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||| ||||||||||||| |||||||||||| ||||||||| Sbjct 11362 TGGACCTTCAGAGCACTGGCCAGAAATCACATGGCGTCAACA 11321 >seq17749 Length=265 Score = 102 bits (112), Expect = 3e-19 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 74 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 15 Query 297 CAGGGTCTTCTTTC 310 |||||||||||||| Sbjct 14 CAGGGTCTTCTTTC 1 >seq109 Length=301274 Score = 87.8 bits (96), Expect = 6e-15 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTT-ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 |||||||| || | | |||||| || | ||| || ||| || || ||||||||||| Sbjct 143283 TTAAGAGAATCCCAAATCACTCCCACCATCTACT-GCACTTCATTAAAATTCTTCACTTT 143341 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| |||| ||||||||||||||||||||||| |||||| Sbjct 143342 GACACTCAGGGCACTGGGCAGAAATCACATTGCATCAACA 143381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634849609344