Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq346 127 9e-27 seq2573 107 8e-21 seq37568 105 3e-20 seq40574 93.3 2e-16 seq29452 75.2 5e-11 >seq346 Length=1143 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 222 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 163 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 162 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 103 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 102 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 63 >seq2573 Length=13222 Score = 107 bits (118), Expect = 8e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| Sbjct 5210 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAAGAAACTCTGGTGGA 5151 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 || || | ||| ||||| ||||||||| || Sbjct 5150 GGTCCGTAATGGTCCTGGCATGCAAATCGGTC 5119 >seq37568 Length=38562 Score = 105 bits (116), Expect = 3e-20 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||| ||||||| |||| |||||||||||||||||||||||||| || |||||| | Sbjct 20947 TGAAC-ATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCC 20889 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| ||||| | ||||| ||||||||| Sbjct 20888 TGACGTGCAAATCGGTCGTCCGACCTGGGTCTAGGGGCGA 20849 >seq40574 Length=81393 Score = 93.3 bits (102), Expect = 2e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||| ||||||||||||||||||||||||||||||| | ||| || | Sbjct 79900 TGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCTGTAGCAGTCC 79959 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || ||||||||| | | ||| | ||||| ||||| Sbjct 79960 TGACGTGCAAATAGGTTGTCCGACCTGGGTCTAGGG 79995 >seq29452 Length=37902 Score = 75.2 bits (82), Expect = 5e-11 Identities = 92/126 (73%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 71 TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGA 130 |||| |||||| | | || | |||||||| ||| ||||||||||| ||||||| Sbjct 6710 TGGGTGGTAAACTCCATCGAGGGCTAAATACCGGCACCAGACCGATAGCCAACAAGTACC 6651 Query 131 GTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190 || | ||||| ||||||| |||||| | |||||||| | | |||||| |||| | Sbjct 6650 GTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCGAGAAGGTGTGAAACTGTTAAG 6591 Query 191 AGGGAA 196 ||| || Sbjct 6590 AGGCAA 6585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078769005950