Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq36912 105 1e-20 seq37034 93.3 7e-17 seq24962 86.0 1e-14 seq385 82.4 1e-13 seq13983 73.4 7e-11 >seq36912 Length=28606 Score = 105 bits (116), Expect = 1e-20 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| ||||| ||| ||||| |||||| ||||| ||||||| Sbjct 17385 TCATCAGTAGGGTAAAACTAACATGTCTTATGGTGGTCT-AACCCAACTCACATTCCCTA 17327 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 ||| |||||||||| |||| ||||| ||||| Sbjct 17326 TTAATGGGTGAACAGTCCAGCGCTTGGTGAATT 17294 >seq37034 Length=60858 Score = 93.3 bits (102), Expect = 7e-17 Identities = 186/270 (69%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| || ||||| |||| ||||||||| | ||||||||| ||||| ||| | Sbjct 60559 TCATCAGGAGCATAAAATTAACTTGTCTCATGGCAGTCTAAACCTAGCTCGTGTTTATTG 60618 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT--CGGTATG-----ATAGGAA 143 ||| ||||| ||| | ||||| ||| |||||||| || | || || | ||||| Sbjct 60619 TTAATGGGTAAACCAACCAACACTTGGTGAATTCTGTTTTTCTGTTTGTGGTGACAGGAA 60678 Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 ||| |||||| ||| | || | || | ||| || | | | ||| |||| | Sbjct 60679 AAGCTGACATCAAAGAGTTGAA--GTAATTTTGCT--GATAG-TCGACTGTCACAGGGTG 60733 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 ||| | ||||||||||||||||| || |||| | | ||| | || | | | | ||| Sbjct 60734 GTTTGCTCTGTGGTAACTTTTCTGACATCTCTTGTTTAAAACCTAGAAAGTC-AGAAGAT 60792 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| ||||| ||||||| Sbjct 60793 CCTGAAGCCACACTAGCATGGCCTGTATTC 60822 >seq24962 Length=25201 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||| ||||||||||||| | | |||| ||||||||| ||| |||| Sbjct 8232 TCATCAGTAGGGTAAACCTAACCTGTCTCACAAGAGCCTAAGCCCAGCTCATGTTTCCTA 8173 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 8172 TTAGTGGGGGAA 8161 >seq385 Length=93083 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||||||||||||| || ||||| || |||||||||||||||| Sbjct 59025 TCATCAGTAAGGTAAAACTAACCTGTCTCACGATGGTCT-AATCCAGCTCACGTTCCCTC 58967 Query 91 TT 92 || Sbjct 58966 TT 58965 >seq13983 Length=7462 Score = 73.4 bits (80), Expect = 7e-11 Identities = 166/246 (67%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 |||| ||||| | | ||||||| ||| ||| |||||||| |||||| ||| || Sbjct 2661 TAACTTGTCTAACCATAGTCTAAATGCAGTTCATGTTCCCTAGTAGTGGAAGAAATGACC 2720 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 | | ||| || ||| |||| ||||| ||| |||||| ||||| | || ||||| Sbjct 2721 AGCACTTGGTAAAGTCTCCTTCAATATGAAAGGCAGAGCCAACATCTCTGAATAAAAAAA 2780 Query 169 CAA-CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 | | | | ||| ||| | | | || || || ||||||||||||||||| || || Sbjct 2781 CCATCATGCCTAA-AACACGTAACCACCTCAGATCACTTATCCCTGTGGTAACTATTTTG 2839 Query 228 GCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC-TTTCATGGTT 286 || || || | ||| | | | | ||| || | ||||| ||| |||||| || Sbjct 2840 AGACTTCCTGCTTAAAACCTGAAAAGTCAGAAGAATTGTGAGGCCTCACTTTTCATTGTC 2899 Query 287 TGTATT 292 |||||| Sbjct 2900 TGTATT 2905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853909668384