Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5877 428 1e-117 seq2043 259 2e-66 seq8003 235 2e-59 seq20951 86.0 2e-14 >seq5877 Length=385 Score = 428 bits (474), Expect = 1e-117 Identities = 248/255 (97%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 60 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||| Sbjct 61 TGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 120 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 180 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 240 Query 519 CACATTGCGTCAACA 533 ||||| ||||||||| Sbjct 241 CACATCGCGTCAACA 255 >seq2043 Length=77240 Score = 259 bits (286), Expect = 2e-66 Identities = 175/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||| ||||| ||||||||||| ||| |||||| | ||| ||||||||||||| Sbjct 22761 CTCCCGCTTATCCTACACCTCTCGTGTCTCTTCACAGCACCAGACCGGAGTCAAGCTCAA 22820 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct 22821 CAGGGTCGTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTGG 22880 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| | Sbjct 22881 ATAGTAGATAGGGACACTGGGAATCTCGTTCATCCATTCATACGCGTCACTAATTAGAAG 22940 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 22941 ACGAGGCATTTGGCTA 22956 Score = 87.8 bits (96), Expect = 6e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 13 CTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAA 72 |||| || ||| || |||| ||| |||| |||||||||||||| || | | ||| | Sbjct 22489 CTCTGCATGAGGTTCCTGTCCTCGCTGAGCTTGCCTTAGGACACCTGTGTAACGCTTTGA 22548 Query 73 CAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| ||||||||| ||||||||||||||| | |||| Sbjct 22549 CAGATGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTC 22589 >seq8003 Length=13837 Score = 235 bits (260), Expect = 2e-59 Identities = 169/195 (87%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||| ||||||||||||||| | ||| |||||| | |||||||||| ||||||| Sbjct 1078 TCCCATTTATTCTACACCTCTGATGTCTCTTCACAGCACCCAACTAGAGTCATGCTCAAC 1019 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||| || || Sbjct 1018 AGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCTGTTCTCTTGGCTGTGGTTTCTCTGGA 959 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||| || || |||||||||||| | ||||||||| ||||| Sbjct 958 TAGTAGGTAGGGACAGTGGGAATATCATTCATCCATTCATGCACTTCACTAATTGGATGA 899 Query 418 CGAGGCATTTGGCTA 432 |||||||||||||| Sbjct 898 TGAGGCATTTGGCTA 884 Score = 86.0 bits (94), Expect = 2e-14 Identities = 84/110 (76%), Gaps = 9/110 (8%) Strand=Plus/Minus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 |||||| ||||| | |||| ||||||| ||| |||||||||||||| ||| Sbjct 1330 GATCTTCTGCTCCATGGGAGGTTTCTGTCCTCA---------CCTTAGGACACCTGTGTT 1280 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | ||||| |||| ||| | ||||||| ||||||||||||| ||| |||| Sbjct 1279 ACGGTTTGACAGGTGTACTGCCCCAGTCAAACTCCCCACCCGACGCTGTC 1230 >seq20951 Length=40473 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| | ||| ||||||| ||| || |||| |||| | | ||||| |||||| ||| | Sbjct 27635 CTTGTCCTCCACAGGAGGCTTCGGTCCTCCCTGAGCTCACTGTAGGAGACCTGCCTTACG 27576 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| || | ||| ||||||||||||||| || |||||||| |||| Sbjct 27575 GTTTGACGGGTGTACCGCCCCAGCCAAACCCCTCACCTGACGCTGTC 27529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634261575072