Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq690916 120 6e-25 seq249163 107 3e-21 seq339850 73.4 7e-11 >seq690916 Length=81 Score = 120 bits (132), Expect = 6e-25 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 109 CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG 168 || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 CTATGCCCGAATACATTAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGG 60 Query 169 TTTCTAGGACCGCCGTAATGA 189 ||||||| ||||||||||| Sbjct 61 TTTCTAGAGTCGCCGTAATGA 81 >seq249163 Length=258 Score = 107 bits (118), Expect = 3e-21 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | |||||||||||||||||||| | | || | |||||||| ||||| Sbjct 257 GAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGA 199 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | ||||| | |||||||||||||||||| ||||| Sbjct 198 CGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG 139 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 138 CCTAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 87 >seq339850 Length=171 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||| ||||||||||||| Sbjct 66 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAGAAAATTAGAGTGT 125 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 126 TCAAAGCAGGCC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 908165040640