Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq531629 136 2e-29 seq205660 98.7 4e-18 seq194331 84.2 9e-14 seq549345 80.6 1e-12 seq687285 77.0 1e-11 >seq531629 Length=79 Score = 136 bits (150), Expect = 2e-29 Identities = 77/78 (99%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 78 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCA 19 Query 665 AATTTGGGTATAGGGGCG 682 |||||||||||||||||| Sbjct 18 AATTTGGGTATAGGGGCG 1 >seq205660 Length=1616 Score = 98.7 bits (108), Expect = 4e-18 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG-TGAACTATGCCTGAATAGGGTGAA 607 ||||| |||| | || | ||||| |||||| | |||||| |||||| |||| || Sbjct 872 GAGTACGAGCGTCCATGCTCAGACCCAAAAGATAGCTGAACTGTGCCTGGGCAGGGCAAA 813 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||||||||||| | | || ||| ||| | ||||||||| | ||| || Sbjct 812 ACCAGAGGAAACTCTGGTGGAGGTTTGTAGTGGTCCTGACATGCAAATCGGTTGTCCAAC 753 Query 668 TTGGGTATAGGGGCGA 683 |||| ||||||||| Sbjct 752 CCGGGTCTAGGGGCGA 737 >seq194331 Length=762 Score = 84.2 bits (92), Expect = 9e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| || | ||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 69 GAGCATCCGTGCTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAG 10 Query 615 GAAACTCTG 623 ||||||||| Sbjct 9 GAAACTCTG 1 >seq549345 Length=225 Score = 80.6 bits (88), Expect = 1e-12 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 87 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 28 Query 100 ATTGGCCAGAGACCGATAGCGCACAAG 126 | ||| |||||||||||| ||||| Sbjct 27 ACCGGCACGAGACCGATAGCCAACAAG 1 >seq687285 Length=81 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 ||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | || Sbjct 81 GAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCCGG 22 Query 672 GTATAGGGGCGA 683 || ||||||||| Sbjct 21 GTCTAGGGGCGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2063511814000