Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq518454 178 2e-42
seq534896 113 7e-23
seq419935 100 4e-19
seq315876 98.7 2e-18
seq168258 93.3 7e-17
seq494975 77.0 5e-12
>seq518454
Length=310
Score = 178 bits (196), Expect = 2e-42
Identities = 170/213 (80%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 50 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT 109
||||||||||||||||||||||| |||| ||| | ||||| | |||| | ||||||||
Sbjct 1 GGGCATCACAGACCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTGTCCCTCT 58
Query 110 AAGAAGCCAGCCACCAACCAT--AGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165
|||||| | |||| |||| || | | | ||| |||||| | | ||||| |
Sbjct 59 AAGAAGTTGGACACCGACCACTCAGGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCAT 118
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 119 TCGTTATCGGAATTAACCAGACAAATAACTCCACCAACTAAGAACAGCCATGCACCACTG 178
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||| |||||||| | |||| ||||
Sbjct 179 CCCACAGAATCTAGAAAGAGGTCTCAACATGTC 211
>seq534896
Length=100
Score = 113 bits (124), Expect = 7e-23
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 80 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 21
Query 202 ACTAAGAACGGCCATGCACC 221
||||||||||||||||||||
Sbjct 20 ACTAAGAACGGCCATGCACC 1
>seq419935
Length=69
Score = 100 bits (110), Expect = 4e-19
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 3 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCAAT 62
Query 254 CTGTC 258
|||||
Sbjct 63 CTGTC 67
>seq315876
Length=216
Score = 98.7 bits (108), Expect = 2e-18
Identities = 62/66 (94%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 152 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 210
Query 75 CAAACT 80
||| ||
Sbjct 211 CAATCT 216
>seq168258
Length=5855
Score = 93.3 bits (102), Expect = 7e-17
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205
|||||| | | ||||| || ||||| ||||||||||||| ||| | |||||||||
Sbjct 42 TTAGCATGCCAGAGTCTCCTTTGTTATTGGAATTAACCAGATGAATTGTTTCACCAACTA 101
Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256
|||| |||||||||||||| |||| ||||| ||| | |||| || ||||
Sbjct 102 AGAATGGCCATGCACCACCCCCCACAGAATGGAGAGAAAGCTCCCAGTCTG 152
>seq494975
Length=56
Score = 77.0 bits (84), Expect = 5e-12
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 50
|||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 50 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 790866559080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |