Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq518454 178 2e-42 seq534896 113 7e-23 seq419935 100 4e-19 seq315876 98.7 2e-18 seq168258 93.3 7e-17 seq494975 77.0 5e-12 >seq518454 Length=310 Score = 178 bits (196), Expect = 2e-42 Identities = 170/213 (80%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 50 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCT 109 ||||||||||||||||||||||| |||| ||| | ||||| | |||| | |||||||| Sbjct 1 GGGCATCACAGACCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTGTCCCTCT 58 Query 110 AAGAAGCCAGCCACCAACCAT--AGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165 |||||| | |||| |||| || | | | ||| |||||| | | ||||| | Sbjct 59 AAGAAGTTGGACACCGACCACTCAGGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCAT 118 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 119 TCGTTATCGGAATTAACCAGACAAATAACTCCACCAACTAAGAACAGCCATGCACCACTG 178 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||| |||||||| | |||| |||| Sbjct 179 CCCACAGAATCTAGAAAGAGGTCTCAACATGTC 211 >seq534896 Length=100 Score = 113 bits (124), Expect = 7e-23 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 80 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 21 Query 202 ACTAAGAACGGCCATGCACC 221 |||||||||||||||||||| Sbjct 20 ACTAAGAACGGCCATGCACC 1 >seq419935 Length=69 Score = 100 bits (110), Expect = 4e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| Sbjct 3 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTCTCAAT 62 Query 254 CTGTC 258 ||||| Sbjct 63 CTGTC 67 >seq315876 Length=216 Score = 98.7 bits (108), Expect = 2e-18 Identities = 62/66 (94%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || Sbjct 152 GTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 210 Query 75 CAAACT 80 ||| || Sbjct 211 CAATCT 216 >seq168258 Length=5855 Score = 93.3 bits (102), Expect = 7e-17 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | ||||| || ||||| ||||||||||||| ||| | ||||||||| Sbjct 42 TTAGCATGCCAGAGTCTCCTTTGTTATTGGAATTAACCAGATGAATTGTTTCACCAACTA 101 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||| |||||||||||||| |||| ||||| ||| | |||| || |||| Sbjct 102 AGAATGGCCATGCACCACCCCCCACAGAATGGAGAGAAAGCTCCCAGTCTG 152 >seq494975 Length=56 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 50 |||||| |||| | |||||||||||||||||||||||||||||||||||| Sbjct 50 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790866559080