Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq353868 264 2e-68 seq315969 237 3e-60 seq73148 194 3e-47 seq62693 165 1e-38 seq113083 152 9e-35 seq476396 104 4e-20 seq135246 102 1e-19 seq122413 91.5 2e-16 >seq353868 Length=216 Score = 264 bits (292), Expect = 2e-68 Identities = 180/201 (90%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 201 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 142 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 141 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAGCAATCCAACGCTTGGTG 82 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 81 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 22 Query 180 TGAACGCTTGGCTGCCACAAG 200 |||||||||||| |||||||| Sbjct 21 TGAACGCTTGGCCGCCACAAG 1 >seq315969 Length=455 Score = 237 bits (262), Expect = 3e-60 Identities = 230/293 (78%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || |||||||||| | |||| ||| ||||||| Sbjct 384 TACTGAGCAGGATTACTATTGCATCAACACATCATCAGTAGAGAAAAAATAAGCTGTCTC 325 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||| ||||||||||||||||||| | || | ||| |||||| |||| | Sbjct 324 ATGATGGTCTAAGCCCAGCTCACGTTCCCTATGATTGAGAGAAAAATCCAGTGCTTTGTG 265 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA-AAAAGCAACGTCGCT 178 ||||||||||| |||||||||||| |||| || ||||||||| |||||| || ||| | Sbjct 264 AATTCTGCTTCACAATGATAGGAAGACCCGAAATTGAAGGATCAAAAAAGCGACATCGTT 205 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||| | Sbjct 204 ATGAATGCTTGGCTGCCACAAGCCTGTTATCCCTGTGTTAACTTTTCTGATACCTCTTGT 145 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 | ||| | | | | || ||||| ||||| |||||||||| || || Sbjct 144 TTAAAACCCCAAAAGCCAGAAAGATCGTGAGGCCCTGCTTTCATGGTCTGCAT 92 >seq73148 Length=6217 Score = 194 bits (214), Expect = 3e-47 Identities = 192/247 (78%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||| ||||| ||| |||| ||||||| ||| |||||||||||||| |||||||| Sbjct 3682 ACTAACCTCTCTCACGACAGTCTGAACCCAGATCATATTCCCTATTAGTGGATGAACAAT 3623 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 |||| ||| |||||||||||| |||| || ||||||| ||||||||||||||||| Sbjct 3622 CCAATTCTTGGTGAATTCTGCTTCACAATGACAGCAAGAGCCAACATCGAAGGATCAAAA 3563 Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 | | |||| ||||||| |||| | |||||||| |||||||||||||||| | ||| Sbjct 3562 ATCGACGTAACTATGAATGCTTAGACACCACAAGCTAGTTATCCCTGTGGTATCGTTTTA 3503 Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGT 285 | || ||| || | |||| || | | || |||||| ||||| | ||||||||| Sbjct 3502 GACAGCTCCTGCTTAAAATGCAGAAAGCCAGAATGGATCGTGAGGCCCCGCTTTCATGGC 3443 Query 286 TTGTATT 292 ||||| Sbjct 3442 CCGTATT 3436 >seq62693 Length=18455 Score = 165 bits (182), Expect = 1e-38 Identities = 167/215 (78%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGG-TCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||| ||| ||||||||||| | ||||||||||||||| |||| || Sbjct 5521 CATCAGCAGGGTAAAGTTAAGGTGTCTCATGACAGCTCTAAACCCAGCTCAAGTTCTCTG 5580 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| | |||| ||| |||| ||||||||||| ||||||| | || | || Sbjct 5581 TTAGTGAGCAAACA-TCCCTTGCTTGGTTAATTCTGCTTCACAATGATAGAATGACCTGA 5639 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| ||||||| | || ||||||||| | ||||||| || ||||||||||| Sbjct 5640 CATCAAAGGGTCAAAAAATGATGTTGCTATGAACACATGGCTGCTGCATGCCAGTTATCC 5699 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 | | ||||| |||||||||| ||| || | |||| Sbjct 5700 CAGGGGTAAGTTTTCTGGCATGTCTTGCTTAAAAT 5734 >seq113083 Length=254 Score = 152 bits (168), Expect = 9e-35 Identities = 114/134 (85%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| ||||||| ||||||| |||||||||||| ||||||||||||| || Sbjct 134 TTAGTGGGTAAACAATCTAACGCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCTGA 75 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||||||||||||| || |||||||||||||| | ||||||||||||||||| Sbjct 74 CATTGAAGGATCAAAAAGTGTTGTTGCTATGAACGCTTGCCCACCACAAGCCAGTTATCC 15 Query 211 CTGTGGTAACTTTT 224 |||| ||||||||| Sbjct 14 CTGTAGTAACTTTT 1 >seq476396 Length=62 Score = 104 bits (114), Expect = 4e-20 Identities = 60/62 (97%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 62 ACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 3 Query 231 CC 232 || Sbjct 2 CC 1 >seq135246 Length=1546 Score = 102 bits (112), Expect = 1e-19 Identities = 83/101 (82%), Gaps = 6/101 (6%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||| ||||||||||| ||||| ||| ||| ||||||||||| Sbjct 1369 ATGATAGGAAGAGCCAACATCGAAGGAACAAAACTCAATGTCACTATGAACGCT------ 1422 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||||||| ||| |||| || ||| || Sbjct 1423 GCACAAGCCAGTTATCCCTGTGATAAATTTTATGACACATC 1463 >seq122413 Length=8962 Score = 91.5 bits (100), Expect = 2e-16 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 8903 GTCACGATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 8962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 847832398080