Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq353868 264 2e-68
seq315969 237 3e-60
seq73148 194 3e-47
seq62693 165 1e-38
seq113083 152 9e-35
seq476396 104 4e-20
seq135246 102 1e-19
seq122413 91.5 2e-16
>seq353868
Length=216
Score = 264 bits (292), Expect = 2e-68
Identities = 180/201 (90%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 201 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 142
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 141 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAGCAATCCAACGCTTGGTG 82
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 81 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 22
Query 180 TGAACGCTTGGCTGCCACAAG 200
|||||||||||| ||||||||
Sbjct 21 TGAACGCTTGGCCGCCACAAG 1
>seq315969
Length=455
Score = 237 bits (262), Expect = 3e-60
Identities = 230/293 (78%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||| | |||| ||| |||||||
Sbjct 384 TACTGAGCAGGATTACTATTGCATCAACACATCATCAGTAGAGAAAAAATAAGCTGTCTC 325
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
|||| ||||||| ||||||||||||||||||| | || | ||| |||||| |||| |
Sbjct 324 ATGATGGTCTAAGCCCAGCTCACGTTCCCTATGATTGAGAGAAAAATCCAGTGCTTTGTG 265
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA-AAAAGCAACGTCGCT 178
||||||||||| |||||||||||| |||| || ||||||||| |||||| || ||| |
Sbjct 264 AATTCTGCTTCACAATGATAGGAAGACCCGAAATTGAAGGATCAAAAAAGCGACATCGTT 205
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||| |
Sbjct 204 ATGAATGCTTGGCTGCCACAAGCCTGTTATCCCTGTGTTAACTTTTCTGATACCTCTTGT 145
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
| ||| | | | | || ||||| ||||| |||||||||| || ||
Sbjct 144 TTAAAACCCCAAAAGCCAGAAAGATCGTGAGGCCCTGCTTTCATGGTCTGCAT 92
>seq73148
Length=6217
Score = 194 bits (214), Expect = 3e-47
Identities = 192/247 (78%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106
|||||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||||||
Sbjct 3682 ACTAACCTCTCTCACGACAGTCTGAACCCAGATCATATTCCCTATTAGTGGATGAACAAT 3623
Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166
|||| ||| |||||||||||| |||| || ||||||| |||||||||||||||||
Sbjct 3622 CCAATTCTTGGTGAATTCTGCTTCACAATGACAGCAAGAGCCAACATCGAAGGATCAAAA 3563
Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
| | |||| ||||||| |||| | |||||||| |||||||||||||||| | |||
Sbjct 3562 ATCGACGTAACTATGAATGCTTAGACACCACAAGCTAGTTATCCCTGTGGTATCGTTTTA 3503
Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGT 285
| || ||| || | |||| || | | || |||||| ||||| | |||||||||
Sbjct 3502 GACAGCTCCTGCTTAAAATGCAGAAAGCCAGAATGGATCGTGAGGCCCCGCTTTCATGGC 3443
Query 286 TTGTATT 292
|||||
Sbjct 3442 CCGTATT 3436
>seq62693
Length=18455
Score = 165 bits (182), Expect = 1e-38
Identities = 167/215 (78%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGG-TCTAAACCCAGCTCACGTTCCCTA 90
|||||| |||||||| ||| ||||||||||| | ||||||||||||||| |||| ||
Sbjct 5521 CATCAGCAGGGTAAAGTTAAGGTGTCTCATGACAGCTCTAAACCCAGCTCAAGTTCTCTG 5580
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||| | |||| ||| |||| ||||||||||| ||||||| | || | ||
Sbjct 5581 TTAGTGAGCAAACA-TCCCTTGCTTGGTTAATTCTGCTTCACAATGATAGAATGACCTGA 5639
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
|||| |||| ||||||| | || ||||||||| | ||||||| || |||||||||||
Sbjct 5640 CATCAAAGGGTCAAAAAATGATGTTGCTATGAACACATGGCTGCTGCATGCCAGTTATCC 5699
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245
| | ||||| |||||||||| ||| || | ||||
Sbjct 5700 CAGGGGTAAGTTTTCTGGCATGTCTTGCTTAAAAT 5734
>seq113083
Length=254
Score = 152 bits (168), Expect = 9e-35
Identities = 114/134 (85%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||| ||||||| ||||||| |||||||||||| ||||||||||||| ||
Sbjct 134 TTAGTGGGTAAACAATCTAACGCTTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCTGA 75
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||||||||||||| || |||||||||||||| | |||||||||||||||||
Sbjct 74 CATTGAAGGATCAAAAAGTGTTGTTGCTATGAACGCTTGCCCACCACAAGCCAGTTATCC 15
Query 211 CTGTGGTAACTTTT 224
|||| |||||||||
Sbjct 14 CTGTAGTAACTTTT 1
>seq476396
Length=62
Score = 104 bits (114), Expect = 4e-20
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 62 ACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 3
Query 231 CC 232
||
Sbjct 2 CC 1
>seq135246
Length=1546
Score = 102 bits (112), Expect = 1e-19
Identities = 83/101 (82%), Gaps = 6/101 (6%)
Strand=Plus/Plus
Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193
||||||||||||||| ||||||||||| ||||| ||| ||| |||||||||||
Sbjct 1369 ATGATAGGAAGAGCCAACATCGAAGGAACAAAACTCAATGTCACTATGAACGCT------ 1422
Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||||||||||||||||||||| ||| |||| || ||| ||
Sbjct 1423 GCACAAGCCAGTTATCCCTGTGATAAATTTTATGACACATC 1463
>seq122413
Length=8962
Score = 91.5 bits (100), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 8903 GTCACGATGAATGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 8962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 847832398080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |