Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq315876 181 2e-43 seq494975 87.8 3e-15 >seq315876 Length=216 Score = 181 bits (200), Expect = 2e-43 Identities = 171/217 (79%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 216 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTAC 158 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | | ||| ||||| ||| |||||| | | || | Sbjct 157 ACTGACTGGCTCAGCTTGTGCCTACCCTCCGCCGGCAGGCGCGGGTAACCCGTTGAACCC 98 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| ||||||| | | ||||||||| || | | | |||||||||| || |||||| Sbjct 97 CATTCGTGATGGGGATCGGGGATTGCAATTCTTCCCCGTGAACGAGGAATTCCCAGTAAG 38 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||| ||||| ||| ||||||||||| |||||||||| Sbjct 37 CGCCGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCC 1 >seq494975 Length=56 Score = 87.8 bits (96), Expect = 3e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| Sbjct 1 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGGGCCAGCGAGTACATCAC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939919063040