Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq98332 221 4e-55 seq621666 188 2e-45 seq34417 188 2e-45 seq406070 185 3e-44 seq338640 183 1e-43 >seq98332 Length=2305 Score = 221 bits (244), Expect = 4e-55 Identities = 151/169 (89%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||| Sbjct 167 TAGAGTCAAGCTCAACAGGGTCTTTTTTCCCTGCTGATTCCGCAGCACCCATTCCCTTGG 108 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||| | ||||| |||||||||||||||||| ||| ||||||||||| || Sbjct 107 CTGTGGTTTCGCTGCAGAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGTGC 48 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 ||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 47 ATCACTAATTAGGTGAC--GGCATTTGGCTACCTTAAGAGAGTCATAGT 1 >seq621666 Length=154 Score = 188 bits (208), Expect = 2e-45 Identities = 109/112 (97%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAA 60 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 112 >seq34417 Length=13299 Score = 188 bits (208), Expect = 2e-45 Identities = 153/184 (83%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||| ||||| |||||||| ||||| || ||||||||| ||||||| ||||||| Sbjct 3850 ACTAGAGTTGAGCTCCACAGGGTCATCTTTTCCTTGCTGATTCCACCAAGCCTGTTCCCT 3791 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA-- 396 ||||||||||| || || ||||| | ||||||||||||||||| || |||||||| Sbjct 3790 CAGCTGTGGTTTCACTGGAGAGTAGGTCGGGACAGTGGGAATCTCCTTCCTCCATTCAAT 3731 Query 397 ---TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 ||| |||| ||||||||||| ||||| ||||||||||||| |||||||| |||||| Sbjct 3730 TAGTGCATGTCATTAATTAGATGATGAGGCCTTTGGCTACCTTAGGAGAGTCACAGTTAC 3671 Query 454 TCCC 457 |||| Sbjct 3670 TCCC 3667 >seq406070 Length=112 Score = 185 bits (204), Expect = 3e-44 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1 TGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 60 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 112 >seq338640 Length=128 Score = 183 bits (202), Expect = 1e-43 Identities = 113/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 121 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 62 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2 Query 357 A 357 | Sbjct 1 A 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1622630544640