Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq98332 221 4e-55
seq621666 188 2e-45
seq34417 188 2e-45
seq406070 185 3e-44
seq338640 183 1e-43
>seq98332
Length=2305
Score = 221 bits (244), Expect = 4e-55
Identities = 151/169 (89%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341
|||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||
Sbjct 167 TAGAGTCAAGCTCAACAGGGTCTTTTTTCCCTGCTGATTCCGCAGCACCCATTCCCTTGG 108
Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401
||||||||||||| | ||||| |||||||||||||||||| ||| ||||||||||| ||
Sbjct 107 CTGTGGTTTCGCTGCAGAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATGTGC 48
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450
||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 47 ATCACTAATTAGGTGAC--GGCATTTGGCTACCTTAAGAGAGTCATAGT 1
>seq621666
Length=154
Score = 188 bits (208), Expect = 2e-45
Identities = 109/112 (97%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAA 60
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 112
>seq34417
Length=13299
Score = 188 bits (208), Expect = 2e-45
Identities = 153/184 (83%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 280 ACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCT 338
|||||||| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||
Sbjct 3850 ACTAGAGTTGAGCTCCACAGGGTCATCTTTTCCTTGCTGATTCCACCAAGCCTGTTCCCT 3791
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA-- 396
||||||||||| || || ||||| | ||||||||||||||||| || ||||||||
Sbjct 3790 CAGCTGTGGTTTCACTGGAGAGTAGGTCGGGACAGTGGGAATCTCCTTCCTCCATTCAAT 3731
Query 397 ---TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453
||| |||| ||||||||||| ||||| ||||||||||||| |||||||| ||||||
Sbjct 3730 TAGTGCATGTCATTAATTAGATGATGAGGCCTTTGGCTACCTTAGGAGAGTCACAGTTAC 3671
Query 454 TCCC 457
||||
Sbjct 3670 TCCC 3667
>seq406070
Length=112
Score = 185 bits (204), Expect = 3e-44
Identities = 108/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1 TGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 60
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 112
>seq338640
Length=128
Score = 183 bits (202), Expect = 1e-43
Identities = 113/121 (93%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 121 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 62
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2
Query 357 A 357
|
Sbjct 1 A 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1622630544640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |