Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq529589 284 4e-74
seq99271 183 9e-44
seq2084 140 1e-30
seq183618 100 9e-19
>seq529589
Length=312
Score = 284 bits (314), Expect = 4e-74
Identities = 198/224 (88%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||||
Sbjct 234 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 175
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 115
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
|||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||
Sbjct 114 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGG 55
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
| | ||||||||||||||||||||||||| ||| |||||
Sbjct 54 CACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATG 11
>seq99271
Length=427
Score = 183 bits (202), Expect = 9e-44
Identities = 174/217 (80%), Gaps = 9/217 (4%)
Strand=Plus/Minus
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351
||||||||| ||| |||||| ||| | | || || ||||| | | | | |||||||
Sbjct 346 GTTGGTTTTGG-TCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTAT 288
Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAATAAACGATA 407
|||||||||||||||||| |||||||| | || ||| | | |||| ||| |||
Sbjct 287 TAGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGAGGAGCGACCAAAGGAACCATA 228
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
|||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 227 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATGCAT 168
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||| |||||||||||||||||| ||||||||||
Sbjct 167 GGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 132
>seq2084
Length=20195
Score = 140 bits (154), Expect = 1e-30
Identities = 121/149 (81%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|| ||||||||||||||| | | | ||| ||||||| ||||| ||||||| ||||
Sbjct 5169 GTGCTCATTCCAATTACAGGTTCTCAT-GAGTCCTGTATTGTTATTTCTTGTCACAACCT 5111
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
| || ||| ||| ||||| |||||| |||||||||||||||||||||||| | | ||
Sbjct 5110 CTCCAGGTCTGGAATGGGTCATTTGCAAACCTGCTGCCTTCCTTGGATGTGGTGGACATT 5051
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCC 149
||||||||||||||||| |||| ||||||
Sbjct 5050 TCTCAGGCTCCCTCTCCAGAATAGAACCC 5022
>seq183618
Length=1321
Score = 100 bits (110), Expect = 9e-19
Identities = 89/110 (81%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| | |||||| |||||||||||||| ||||||||||||| | | | ||
Sbjct 1283 CAAAGGAACCAGAACTGACTTAATGAGCCATTCACAGTTTCACTGTACCGCCCGAGTGTA 1224
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||| ||| ||||||||||| ||||||| |||||| ||| ||||||| ||
Sbjct 1223 CTTACACAAGCATGGCTTAAGCTTTGAGCCAAGCACATG-CTACTGGAAG 1175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1498789857280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |