Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq529589 284 4e-74 seq99271 183 9e-44 seq2084 140 1e-30 seq183618 100 9e-19 >seq529589 Length=312 Score = 284 bits (314), Expect = 4e-74 Identities = 198/224 (88%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||| Sbjct 234 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 175 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 115 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||| Sbjct 114 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGG 55 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | | ||||||||||||||||||||||||| ||| ||||| Sbjct 54 CACAGACAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATG 11 >seq99271 Length=427 Score = 183 bits (202), Expect = 9e-44 Identities = 174/217 (80%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAG-CATGTAT 351 ||||||||| ||| |||||| ||| | | || || ||||| | | | | ||||||| Sbjct 346 GTTGGTTTTGG-TCTGATAAATGCACGCGTCCCCGGAGGTCGGCGCTCGTCGGCATGTAT 288 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACTATCAAATAAACGATA 407 |||||||||||||||||| |||||||| | || ||| | | |||| ||| ||| Sbjct 287 TAGCTCTAGAATTACCACAGTTATCCAAGGAGCGGGAGAGGAGCGACCAAAGGAACCATA 228 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||||||||||||||| | | | ||||||||||||||| Sbjct 227 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGCCCGTGTGTACTTAGACATGCAT 168 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||||||||||||||||| |||||||||| Sbjct 167 GGCTTAAGCTTTGAGACAAGCATATG-CTACTGGCAG 132 >seq2084 Length=20195 Score = 140 bits (154), Expect = 1e-30 Identities = 121/149 (81%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||||| | | | ||| ||||||| ||||| ||||||| |||| Sbjct 5169 GTGCTCATTCCAATTACAGGTTCTCAT-GAGTCCTGTATTGTTATTTCTTGTCACAACCT 5111 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | || ||| ||| ||||| |||||| |||||||||||||||||||||||| | | || Sbjct 5110 CTCCAGGTCTGGAATGGGTCATTTGCAAACCTGCTGCCTTCCTTGGATGTGGTGGACATT 5051 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||||||||||||| |||| |||||| Sbjct 5050 TCTCAGGCTCCCTCTCCAGAATAGAACCC 5022 >seq183618 Length=1321 Score = 100 bits (110), Expect = 9e-19 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| | |||||| |||||||||||||| ||||||||||||| | | | || Sbjct 1283 CAAAGGAACCAGAACTGACTTAATGAGCCATTCACAGTTTCACTGTACCGCCCGAGTGTA 1224 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||| ||||||||||| ||||||| |||||| ||| ||||||| || Sbjct 1223 CTTACACAAGCATGGCTTAAGCTTTGAGCCAAGCACATG-CTACTGGAAG 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1498789857280