Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq470410 125 6e-24 seq102374 98.7 8e-16 seq92776 91.5 1e-13 seq30292 89.7 4e-13 >seq470410 Length=401 Score = 125 bits (138), Expect = 6e-24 Identities = 127/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || ||||||||||| ||||| ||||||||||| ||||| || Sbjct 252 GGTGTACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTGCCCAAGTTCTGCTG 193 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | ||||| | || ||||| | |||||| || ||||||||||| || Sbjct 192 ATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCGGTCTG 133 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||| |||||||||| || ||||| || | ||||||||| Sbjct 132 GGACTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 93 >seq102374 Length=14565 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||| ||| ||| ||||||||||| | | || || ||||||||||| ||||| |||| Sbjct 7030 TGGCACGGTTCAGCCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 6971 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||||||| || ||||||||||||||||| | ||||| || || ||||||| Sbjct 6970 TCCTCATGGAGAACGTTCACTCGGAGATGTACAGCTTGCTCATAGACACCTACATCA 6914 >seq92776 Length=9696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || || || || ||||| | ||||||||| |||| | || ||||||| |||||| Sbjct 1417 GACAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGACATTTGGCAGATGTAC 1476 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || |||||||||||||||| ||||||||| Sbjct 1477 AAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 1514 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| |||||||| | || || || |||||||| |||||||||| Sbjct 2270 TGGAGCGGTTCAGTCAGGAAGTGCAAGTCACAGAAGCCCGCTGTTTCTATGGCTTCCAGA 2329 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||||||||| || | || || || ||||||||| | || || || || ||||| Sbjct 2330 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTCCTAATTGACACCTACAT 2384 >seq30292 Length=3159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 1118 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 1177 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || || ||| || |||||||||||||| ||||| || ||||||| Sbjct 1178 CCCAGTG-TTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAGTGCCAGGGCTCCAGGT 1236 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 1237 AGATGGCAAA--AGCCC 1251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393843468675200