Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 2e-22
seq2929 105 5e-18
seq1781 96.9 3e-15
>seq1
Length=196202544
Score = 120 bits (132), Expect = 2e-22
Identities = 126/162 (78%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||
Sbjct 194683618 GGTATACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 194683677
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||| ||||| | ||||| | || ||||||| |||||| || ||||| ||||| ||
Sbjct 194683678 ATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTG 194683737
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|| || |||||||||| || ||||| || | |||||||||
Sbjct 194683738 TGATTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 194683777
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/137 (75%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | || || ||||| || |
Sbjct 194684934 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 194684993
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||| || |||||||
Sbjct 194684994 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGCTCCAGGT 194685052
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 194685053 AGATGGCAAA--AGCCC 194685067
>seq2929
Length=111302122
Score = 105 bits (116), Expect = 5e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || |||||||| |||| ||||| |||||||| ||||||||||
Sbjct 96933037 TGGAGCGCTTCAGTCAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGA 96933096
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|||||||||| || | || || || ||||||||| ||||||| || || ||||| | ||
Sbjct 96933097 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGG 96933156
Query 61376 A 61376
|
Sbjct 96933157 A 96933157
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || ||| ||||| || || || ||||| | ||||||||| |||| | ||
Sbjct 96932266 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCCATCCAGTACCATGAC 96932325
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|| |||| |||||||| ||||| || || ||||||||||||| |||||||||
Sbjct 96932326 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 96932378
>seq1781
Length=149560735
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| | | || || ||||||||||| |||||||||||| ||| ||||||
Sbjct 129694314 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATTCTCATTGAGAAT 129694255
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||||| ||||||||||| | || || || || |||||||
Sbjct 129694254 GTTCACTCAGAGATGTACAGCTTGCTTATAGACACTTACATCA 129694212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454255174000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |