Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq2929 105 5e-18 seq1781 96.9 3e-15 >seq1 Length=196202544 Score = 120 bits (132), Expect = 2e-22 Identities = 126/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 194683618 GGTATACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 194683677 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| | ||||| | || ||||||| |||||| || ||||| ||||| || Sbjct 194683678 ATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTG 194683737 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || || |||||||||| || ||||| || | ||||||||| Sbjct 194683738 TGATTCGATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 194683777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | || || ||||| || | Sbjct 194684934 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTTT 194684993 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||| || ||||||| Sbjct 194684994 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGCTCCAGGT 194685052 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 194685053 AGATGGCAAA--AGCCC 194685067 >seq2929 Length=111302122 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || |||||||| |||| ||||| |||||||| |||||||||| Sbjct 96933037 TGGAGCGCTTCAGTCAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGA 96933096 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||| || | || || || ||||||||| ||||||| || || ||||| | || Sbjct 96933097 TTGCCATGGAAAACATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGG 96933156 Query 61376 A 61376 | Sbjct 96933157 A 96933157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || ||| ||||| || || || ||||| | ||||||||| |||| | || Sbjct 96932266 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCCATCCAGTACCATGAC 96932325 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || || ||||||||||||| ||||||||| Sbjct 96932326 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 96932378 >seq1781 Length=149560735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| |||||||||||| ||| |||||| Sbjct 129694314 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTCCAGATTCTCATTGAGAAT 129694255 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | || || || || ||||||| Sbjct 129694254 GTTCACTCAGAGATGTACAGCTTGCTTATAGACACTTACATCA 129694212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454255174000