Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13]
61,831 sequences; 1,129,694,867 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq34904 125 6e-24
seq8137 91.5 1e-13
seq32411 87.8 1e-12
>seq34904
Length=29476
Score = 125 bits (138), Expect = 6e-24
Identities = 127/162 (78%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| ||
Sbjct 10499 GGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 10440
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| ||
Sbjct 10439 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTG 10380
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|| |||||||| |||| || ||||| || | |||||||||
Sbjct 10379 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 10340
Score = 98.7 bits (108), Expect = 8e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || |
Sbjct 9099 CATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 9040
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||||||| |||||||
Sbjct 9039 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8981
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 8980 AGATGGCAAA--AGCCC 8966
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/188 (72%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740
|||||| ||| | |||||||||||||| |||||||| || | || || ||||||||
Sbjct 12901 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 12842
Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798
||||| ||||| | | | | ||| | | ||||| ||||| | || |||| ||
Sbjct 12841 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTCTC-AAAGGGGTACCTCA 12784
Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858
||| || |||| ||| ||||| || || || ||||| || ||||||||||| || |
Sbjct 12783 TCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 12724
Query 65859 TGGAACGT 65866
|||| |||
Sbjct 12723 TGGAGCGT 12716
>seq8137
Length=98436
Score = 91.5 bits (100), Expect = 1e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| | | || || ||||||||||| ||||| |||||| ||| |||||
Sbjct 7390 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 7449
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| ||||| ||||||||||| | ||||| || || |||||||
Sbjct 7450 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 7492
>seq32411
Length=23632
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|| || || ||| | | || || ||||||||||| |||||||||||||||||||| |||
Sbjct 22934 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 22875
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
| || || || ||||||||| |||| || || || |||||
Sbjct 22874 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 22834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397268406545840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |