Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gavia_20stellata_20[refseq_20GCF_5F000690875.1_202014-05-13] 61,831 sequences; 1,129,694,867 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq34904 125 6e-24 seq8137 91.5 1e-13 seq32411 87.8 1e-12 >seq34904 Length=29476 Score = 125 bits (138), Expect = 6e-24 Identities = 127/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 10499 GGTGTACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTG 10440 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| ||||| || ||||| | || ||||||| ||||||||| ||||||||||| || Sbjct 10439 ATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTCTGTCTG 10380 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 || |||||||| |||| || ||||| || | ||||||||| Sbjct 10379 AGATTCAATGATAGCGTACC--AGAGCTGCTGGGCCTTCACC 10340 Score = 98.7 bits (108), Expect = 8e-16 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || | Sbjct 9099 CATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTCTTT 9040 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || ||||| || |||||||||||||| ||||||||| ||||||| Sbjct 9039 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 8981 Query 66459 AGATGGCGAACGAGCCC 66475 ||||||| || ||||| Sbjct 8980 AGATGGCAAA--AGCCC 8966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATG 65740 |||||| ||| | |||||||||||||| |||||||| || | || || |||||||| Sbjct 12901 TCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAATAAATG 12842 Query 65741 GTCTCGAAAATGCG-TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CA 65798 ||||| ||||| | | | | ||| | | ||||| ||||| | || |||| || Sbjct 12841 GTCTCAAAAATTTGCTGGTTCAAGCGC-TGGGCCTCGGGACTCTC-AAAGGGGTACCTCA 12784 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 ||| || |||| ||| ||||| || || || ||||| || ||||||||||| || | Sbjct 12783 TCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGCGTCTGT 12724 Query 65859 TGGAACGT 65866 |||| ||| Sbjct 12723 TGGAGCGT 12716 >seq8137 Length=98436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | | || || ||||||||||| ||||| |||||| ||| ||||| Sbjct 7390 CAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAAC 7449 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || ||||| ||||||||||| | ||||| || || ||||||| Sbjct 7450 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 7492 >seq32411 Length=23632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 || || || ||| | | || || ||||||||||| |||||||||||||||||||| ||| Sbjct 22934 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 22875 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || || || ||||||||| |||| || || || ||||| Sbjct 22874 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 22834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397268406545840