Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq47 95.1 5e-17 seq86 93.3 2e-16 >seq47 Length=5956553 Score = 95.1 bits (104), Expect = 5e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | | Sbjct 3145442 AAAGATGGTGAACTATGCCTGGGGAGGGCGAAGCCAGAGGAACTTCTGGTGGAGGTCCAC 3145501 Query 636 AGCGGTTCTGGCGTGCAAATCG 657 |||||| ||| | ||||||||| Sbjct 3145502 AGCGGTCCTGACATGCAAATCG 3145523 >seq86 Length=3313012 Score = 93.3 bits (102), Expect = 2e-16 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||||| || | |||||| ||||||||||||||||||| || |||| |||| Sbjct 2898857 GAGCACGAGCATCCATGCTAGGACCCTAAAGATGGTGAACTATGCCCGAC-AGGGCGAAG 2898915 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||||||||||||||||||| | ||| | ||| ||||||||| | || ||| Sbjct 2898916 CCAGAGGAAACTCTGGTGGAATTCTGTAGCCATCCTGACGTGCAAATTGGTCATCA 2898971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079415723450