Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq69 271 1e-70 seq123 116 6e-24 >seq69 Length=3900112 Score = 271 bits (300), Expect = 1e-70 Identities = 236/293 (81%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| || || ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 6188 TACTGAGTGGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 6247 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || |||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 6248 ACGATGGTCTAAATCCAGTTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTA 6307 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| || ||||||| ||||||||| ||||||||||||||| ||||||||| Sbjct 6308 AATTCTGCTTCACAATCATAGGAAAAGCCGACATTGAAGGATCAAAAAGCTACGTCGCTA 6367 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||| | |||||||||||||||||| |||||| || Sbjct 6368 TGAACGCTTGGCCGCCACACG---------CCTGTGGTAACTTTTCTGACACCTCCTGCT 6418 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | | | |||||||| ||||| |||||||| ||| |||||| Sbjct 6419 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCACTTTCACGGTCTGTATT 6471 >seq123 Length=2510487 Score = 116 bits (128), Expect = 6e-24 Identities = 129/168 (77%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 |||| |||||||| | | || ||| | | ||| |||||||| |||| ||||||||| Sbjct 1954751 CTAATCCCAGCTCCCATCCCTTATCACAG--TGAGCAATCCAATGCTTGGTGAATTCTGC 1954694 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 ||| ||| || ||||||| | || |||| ||||||||||| || ||||||| | || Sbjct 1954693 TTCCCAATGGCAGCAAGAGCCAAGATGAAAGGCTCAAAAAGCAATGTTGCTATGAGCACT 1954634 Query 188 TGGCTGCCACAAGCCAGT-TATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||||||||| || |||||||||||| ||| |||||| Sbjct 1954633 TGG--GCCACAAGCCAGTCCAT--CTGTGGTAACTTGCCTGACACCTC 1954590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854167269984