Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq69 268 3e-69 seq37 98.7 3e-18 >seq69 Length=3900112 Score = 268 bits (296), Expect = 3e-69 Identities = 177/196 (90%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| |||| |||||||| ||| |||||| | |||||||||||||||||| Sbjct 6813 CTCCCACTTACTCTATACCTCTCATGTCTCTTCACAGCACCAGACTAGAGTCAAGCTCAA 6872 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||| |||||||||||||||||||||||| |||| |||||||||||||| || | Sbjct 6873 CAGGGTCTTCCTTCCCCGCTGATTCCGCCAAGCCCATTCCTTTGGCTGTGGTTTCACTGG 6932 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 6933 ATAGTAGGTAGGCACAGTGGGAATCTCGTTCATCCATTCATGCACGTCACTAATTAGATG 6992 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 6993 ACGAGGCATTTGGCTA 7008 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| | |||| |||| | ||||||||||||||||||| | Sbjct 6506 CTTCTGCTCCATGGGAGGTTTCCATCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 6565 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| |||| ||| |||||||| ||||||||||||||| Sbjct 6566 CTTTGACAGGTGTACCGCCCCATTCAAACTCCCCACCTG 6604 >seq37 Length=6552786 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/101 (82%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATA-GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||| ||||| || |||||| ||| | | || || |||||||||||||||| Sbjct 1513449 CTTAAGAGAATCATAAGTCACTCCCACCGATCTACTGCATTTCATTGAATTTCTTCACTT 1513390 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||| |||||||| ||||||||||||| ||||| Sbjct 1513389 TGACATTCAGGGCACTGGGATGAAATCACATTGCAGCAACA 1513349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634754587872