Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grus_20japonensis_20[genbank_20GCA_5F002002985.1_202017-02-10] 357,545 sequences; 1,265,634,512 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq59126 342 9e-92 seq197341 150 3e-34 seq113977 123 4e-26 seq132166 95.1 2e-17 seq99631 73.4 7e-11 >seq59126 Length=1936 Score = 342 bits (378), Expect = 9e-92 Identities = 253/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 1084 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1025 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1024 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 965 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 964 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 905 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 904 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 845 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 844 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 791 >seq197341 Length=2849 Score = 150 bits (166), Expect = 3e-34 Identities = 193/263 (73%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||| |||||||| ||||||||| ||||||||||||||| |||| | Sbjct 390 TCATCAGGAGGGTGAAACTAACTTGTCTCATGGTAGTCTAAACCCAGCTCGTGTTCATTG 449 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| ||||||||| ||||||||| |||||||| || | ||| ||||| ||| || Sbjct 450 TTAATGGGTGAACCGACCAACGCTTGATGAATTCTGTTTTGTGGTGAGAGGAAAAGCTGA 509 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||| | ||| ||| | ||| || ||||| ||||| || | ||| || Sbjct 510 CATCAAAGGGT--TGAAGTAACTTTGCT---AATGCTTGACTGCCGCAGGGTGGTTTTCT 564 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| || |||| || | ||| | || || | | ||| ||| Sbjct 565 CTGTGGTAACTTTTCTGACATCTCTTGCTTAAAACCTAGA-AAACCAGACAATCCTGAGG 623 Query 271 CCACACTTTCATGGTTTGTATTC 293 ||||||| |||| ||||||| Sbjct 624 CCACACTAGTATGGCCTGTATTC 646 >seq113977 Length=5576 Score = 123 bits (136), Expect = 4e-26 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||| ||||| ||||||||||||||||| || ||||||||| ||||||| Sbjct 81 ATGATAGGAAGAGCCAACATCAAAGGATCAAAAAGCAACATCACTATGAACGTTTGGCTG 22 Query 194 CCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||||||| Sbjct 21 CCACAAGCCAGTTATCCCTGT 1 >seq132166 Length=9030 Score = 95.1 bits (104), Expect = 2e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||||||||| ||| || || ||||||||||||| |||||||| Sbjct 7526 TCATCAGTACGGTAAAACTAACCTGTTTCACAACAGTTTAAACCCAGCTCATGTTCCCTA 7467 Query 91 TTAGTGGGTGAA 102 |||||||| ||| Sbjct 7466 TTAGTGGGGGAA 7455 >seq99631 Length=20444 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/62 (87%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||||||||||| ||| | ||| |||||||||||| |||||| Sbjct 8794 TCATCAGTAAGGTAAAACTAACCTGTCTTGTGATGCTCT-AACCCAGCTCACATTCCCTC 8736 Query 91 TT 92 || Sbjct 8735 TT 8734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851345135520