Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq954 178 2e-42 seq557 91.5 3e-16 >seq954 Length=4320062 Score = 178 bits (196), Expect = 2e-42 Identities = 208/276 (75%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||||||| ||| |||| ||| || ||| | | | |||||||||| ||||||||||||| Sbjct 1553759 ATGCCCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAGAAAATTAGAGTGT 1553818 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||||||| || | |||| ||| |||||||| ||||||||| | ||||| Sbjct 1553819 TCAAAGCAGGCCGGCCGCCGGCATACTGCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 1553877 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | | || | |||||||| ||||| | |||||| | || Sbjct 1553878 CTATTTTGTTGGTTTTCGGAAACGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 1553937 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| ||||| ||| |||||||| || Sbjct 1553938 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCTAGAGCGAAAGCATT 1553997 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 1553998 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1554032 >seq557 Length=7899598 Score = 91.5 bits (100), Expect = 3e-16 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | ||||| |||||||||||||| | | | | | ||||||| ||||| Sbjct 249872 GAATAGGAC-TCCGGTTATATTTTGTTGGTTTTTGGCAACAGGGCCTTGATTAAGAGGGA 249930 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | |||| || ||||| || ||||||||||||||||| | | |||| Sbjct 249931 TGGCTGGGGTCATCTGTATTGTGCTGCTCGAGGTGAAATTCTTGGACTGGTGCAAGAAGG 249990 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| | |||||| || ||||| ||||||||||||||||| Sbjct 249991 CCTAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCAG 250032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915190637504