Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1008 342 9e-92
seq343 342 9e-92
seq954 271 1e-70
seq159 120 5e-25
seq2 80.6 5e-13
>seq1008
Length=4023344
Score = 342 bits (378), Expect = 9e-92
Identities = 253/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 2932472 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 2932413
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2932412 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 2932353
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2932352 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2932293
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2932292 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 2932233
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | |||||||| ||||| | |||||| ||| |||||||
Sbjct 2932232 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 2932179
>seq343
Length=56173
Score = 342 bits (378), Expect = 9e-92
Identities = 253/294 (86%), Gaps = 1/294 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 25488 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 25547
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 25548 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 25607
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 25608 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 25667
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 25668 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 25727
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| ||| | | | |||||||| ||||| | |||||| ||| |||||||
Sbjct 25728 TAAAACCCAAAAAGCCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 25781
>seq954
Length=4320062
Score = 271 bits (300), Expect = 1e-70
Identities = 202/235 (86%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 320129 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 320188
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| | |||||| ||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 320189 GCGGCAGTCTAATCCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCCCACGCTTGGTG 320248
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
| |||||||||| ||||||||||||||| ||||||||| |||||||||||| ||| |||
Sbjct 320249 AGTTCTGCTTCGCAATGATAGGAAGAGCCAACATCGAAGAATCAAAAAGCAAAGTCACTA 320308
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct 320309 TGAACGCTTGGCCGCTACAAGCCAATTATCCCTGTGGTAACTTTTCTGATACCTC 320363
>seq159
Length=2242379
Score = 120 bits (132), Expect = 5e-25
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||||||||||||||| |||||| ||||| |||||| ||||| |||||||
Sbjct 248428 TCATCAGTAGGGTAAAACTAACCTGTGTCATGATGGTCT-AACCCAACTCACATTCCCTA 248486
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATT 123
|||||||||||||||| || ||||| |||||
Sbjct 248487 TTAGTGGGTGAACAATTCAGCGCTTGGTGAATT 248519
>seq2
Length=24518098
Score = 80.6 bits (88), Expect = 5e-13
Identities = 55/61 (90%), Gaps = 1/61 (2%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|||||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||||| |
Sbjct 6886575 CATCAGTAAGGTAAAAGTAACCTGTCTCATGATGGTCT-AACCCAGCTCATGTTCCCTCT 6886517
Query 92 T 92
|
Sbjct 6886516 T 6886516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854391259488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |