Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq343 315 2e-83 seq1008 304 4e-80 seq295 197 5e-48 seq518 100 9e-19 seq954 84.2 7e-14 >seq343 Length=56173 Score = 315 bits (348), Expect = 2e-83 Identities = 354/483 (73%), Gaps = 58/483 (12%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 25815 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 25874 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| || Sbjct 25875 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 25934 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171 | || |||| || | ||| |||||||| | |||| | || Sbjct 25935 GCGCCCGGCGCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 25994 Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222 |||| ||| | ||||| |||||||||| || |||| |||||||||| Sbjct 25995 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGGGGTATTTCACCGACGGCCG 26053 Query 223 -----------------TTGCGCCGAAACGGC----------------TCCCACTTATTC 249 | || ||| | || | |||||||||||| Sbjct 26054 GGACGCCGGCGGGCGGGTCGCCCCGCACCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 26113 Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309 ||||||||||| ||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 26114 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 26173 Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||||||||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 26174 CCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 26233 Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 26234 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 26293 Query 430 CTA 432 ||| Sbjct 26294 CTA 26296 Score = 167 bits (184), Expect = 8e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 30756 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 30815 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| ||||||||| Sbjct 30816 GACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 30855 >seq1008 Length=4023344 Score = 304 bits (336), Expect = 4e-80 Identities = 185/196 (94%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||||| Sbjct 2931789 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 2931730 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2931729 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2931670 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2931669 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 2931610 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 2931609 ACGAGGCATTTGGCTA 2931594 Score = 102 bits (112), Expect = 3e-19 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| | Sbjct 2932145 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 2932086 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||| || ||||||||| ||||||||||||||| | |||| | | ||| || Sbjct 2932085 CTTTGACAGGTGGACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGCGCGGGTC 2932026 Query 127 G-GCCCGC 133 | |||||| Sbjct 2932025 GCGCCCGC 2932018 >seq295 Length=125393 Score = 197 bits (218), Expect = 5e-48 Identities = 164/200 (82%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA- 295 |||||| || ||||| ||||| | ||| || || | | |||| |||||| ||| Sbjct 111384 CTCCCATTTGTTCTATTCCTCTGATGTCTCTTTGCAGTGCCAGACTGGAGTCATGCTTCT 111325 Query 296 ---ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| | Sbjct 111324 TTCACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCTCTTGGCTGTGGTTTTG 111265 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || ||||||| ||||||||||||||||||| || |||||||||||| | ||||||||| Sbjct 111264 CTCGATAGTAACTAGGGACAGTGGGAATCTCATTTATCCATTCATGCACATCACTAATTG 111205 Query 413 GATGACGAGGCATTTGGCTA 432 ||||| |||||||||||||| Sbjct 111204 GATGATGAGGCATTTGGCTA 111185 >seq518 Length=8545062 Score = 100 bits (110), Expect = 9e-19 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| | |||||||| || | | ||| ||| ||||||||| ||||||||||||||||| Sbjct 1879417 CTTAAAA-AGTCATAGATATTTCTGCCTTTTTCCCGCGCTTCATTGAATTTCTTCACTTT 1879359 Query 494 GACATTCAGAGCACTGGGCAGA 515 |||||||||||||||||||||| Sbjct 1879358 GACATTCAGAGCACTGGGCAGA 1879337 >seq954 Length=4320062 Score = 84.2 bits (92), Expect = 7e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT-AT 65 ||| |||||| | |||| |||| | |||| |||| | ||||||||||| |||||| || Sbjct 320456 CTTCTGCTCTGCGGGAGGTTTCCGACCTCCCTGAGCTCGCCTTAGGACACTTGCGTTAAT 320515 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | ||| |||| || | ||||||| ||||| |||||| || || |||| Sbjct 320516 GCTTTGACAGGGGTACTGCCCCAGTCAAACCCCCCACTTGCCACTGTC 320563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635183271904