Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq343 315 2e-83
seq1008 304 4e-80
seq295 197 5e-48
seq518 100 9e-19
seq954 84.2 7e-14
>seq343
Length=56173
Score = 315 bits (348), Expect = 2e-83
Identities = 354/483 (73%), Gaps = 58/483 (12%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| |
Sbjct 25815 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 25874
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||| ||| ||||||||| ||||||||||||||| | |||| | ||| ||
Sbjct 25875 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGAGCGGGTC 25934
Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG--------TCGGTGAAGACCA 171
| || |||| || | ||| |||||||| | |||| | ||
Sbjct 25935 GCGCCCGGCGCGCGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCCCTCGGGGCTCGCCC 25994
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC--------- 222
|||| ||| | ||||| |||||||||| || |||| ||||||||||
Sbjct 25995 CC-CCGCCTCACCGGGTAAGTGAAAAAACGATCAGAGTAGGGGTATTTCACCGACGGCCG 26053
Query 223 -----------------TTGCGCCGAAACGGC----------------TCCCACTTATTC 249
| || ||| | || | ||||||||||||
Sbjct 26054 GGACGCCGGCGGGCGGGTCGCCCCGCACCGCCGAGCGCGCGCCCGGCCTCCCACTTATTC 26113
Query 250 TACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 309
||||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 26114 TACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTT 26173
Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369
|||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 26174 CCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGG 26233
Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 26234 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 26293
Query 430 CTA 432
|||
Sbjct 26294 CTA 26296
Score = 167 bits (184), Expect = 8e-39
Identities = 97/100 (97%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 30756 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTT 30815
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||| |||||||||
Sbjct 30816 GACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 30855
>seq1008
Length=4023344
Score = 304 bits (336), Expect = 4e-80
Identities = 185/196 (94%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| |||||| | | ||||||||||||||||||
Sbjct 2931789 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGCGCCAGACTAGAGTCAAGCTCAA 2931730
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2931729 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2931670
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2931669 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 2931610
Query 417 ACGAGGCATTTGGCTA 432
||||||||||||||||
Sbjct 2931609 ACGAGGCATTTGGCTA 2931594
Score = 102 bits (112), Expect = 3e-19
Identities = 100/128 (78%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| |||| || |||| |||| | ||||||||||||||||||| |
Sbjct 2932145 CTTCTGCTCCGCGGGAGGTTTCCGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 2932086
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||| || ||||||||| ||||||||||||||| | |||| | | ||| ||
Sbjct 2932085 CTTTGACAGGTGGACCGCCCCAGTCAAACTCCCCACCTGCCGCTGTCCCCGGCGCGGGTC 2932026
Query 127 G-GCCCGC 133
| ||||||
Sbjct 2932025 GCGCCCGC 2932018
>seq295
Length=125393
Score = 197 bits (218), Expect = 5e-48
Identities = 164/200 (82%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA- 295
|||||| || ||||| ||||| | ||| || || | | |||| |||||| |||
Sbjct 111384 CTCCCATTTGTTCTATTCCTCTGATGTCTCTTTGCAGTGCCAGACTGGAGTCATGCTTCT 111325
Query 296 ---ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352
||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| |
Sbjct 111324 TTCACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAGCCTGTTCTCTTGGCTGTGGTTTTG 111265
Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412
|| ||||||| ||||||||||||||||||| || |||||||||||| | |||||||||
Sbjct 111264 CTCGATAGTAACTAGGGACAGTGGGAATCTCATTTATCCATTCATGCACATCACTAATTG 111205
Query 413 GATGACGAGGCATTTGGCTA 432
||||| ||||||||||||||
Sbjct 111204 GATGATGAGGCATTTGGCTA 111185
>seq518
Length=8545062
Score = 100 bits (110), Expect = 9e-19
Identities = 72/82 (88%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||| | |||||||| || | | ||| ||| ||||||||| |||||||||||||||||
Sbjct 1879417 CTTAAAA-AGTCATAGATATTTCTGCCTTTTTCCCGCGCTTCATTGAATTTCTTCACTTT 1879359
Query 494 GACATTCAGAGCACTGGGCAGA 515
||||||||||||||||||||||
Sbjct 1879358 GACATTCAGAGCACTGGGCAGA 1879337
>seq954
Length=4320062
Score = 84.2 bits (92), Expect = 7e-14
Identities = 84/108 (78%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT-AT 65
||| |||||| | |||| |||| | |||| |||| | ||||||||||| |||||| ||
Sbjct 320456 CTTCTGCTCTGCGGGAGGTTTCCGACCTCCCTGAGCTCGCCTTAGGACACTTGCGTTAAT 320515
Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
| ||| |||| || | ||||||| ||||| |||||| || || ||||
Sbjct 320516 GCTTTGACAGGGGTACTGCCCCAGTCAAACCCCCCACTTGCCACTGTC 320563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635183271904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |