Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq537 98.7 8e-16
seq556 89.7 4e-13
seq218 82.4 6e-11
>seq537
Length=7949590
Score = 98.7 bits (108), Expect = 8e-16
Identities = 106/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || |||||||| ||||||||||| |||| || || | ||||| ||||| || |
Sbjct 7422288 CATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTAGCTCGCTGCTCTTCTTT 7422229
Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458
|| ||| || || ||||| || |||||||||||||| ||||||||| |||||||
Sbjct 7422228 CCCAGTG-TTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAGGT 7422170
Query 66459 AGATGGCGAACGAGCCC 66475
||||||| || |||||
Sbjct 7422169 AGATGGCAAA--AGCCC 7422155
>seq556
Length=21056529
Score = 89.7 bits (98), Expect = 4e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
||| |||||| ||||||||||| | | || || ||||||||||| ||||| ||||
Sbjct 17126258 TGGCACGTTTTAGTCAGGAGGTGCAGATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAGA 17126317
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
|| || ||||| || ||||| ||||||||||| | ||||| || || |||||||
Sbjct 17126318 TTCTTATTGAGAACGTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCA 17126374
>seq218
Length=12993727
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | || || || |||||||| ||||| ||||
Sbjct 5721351 TGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGCTGTTTCTATGGCTTTCAGA 5721292
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||||||||| ||| | || || || ||||||||| |||| || || || |||||
Sbjct 5721291 TTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACAT 5721237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397563043196720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |