Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidothrix_20coronata_20[refseq_20GCF_5F001604755.1_202016-03-31] 4,612 sequences; 1,079,577,334 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1966 242 7e-62 seq20 75.2 2e-11 >seq1966 Length=3153 Score = 242 bits (268), Expect = 7e-62 Identities = 203/245 (83%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 809 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 868 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 869 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 927 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 928 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 987 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 988 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 1046 Query 314 AGGGG 318 |||| Sbjct 1047 GGGGG 1051 >seq20 Length=8244390 Score = 75.2 bits (82), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || || ||| | | | | ||||| || ||||||||||||| Sbjct 6817026 ATGCTCTTAGCTGAGTGTCCCACGGGGCCTGAAGCGTCTACTTCGAGAAAATTAGAGTGT 6816967 Query 98 TCAAAGCAGGCCTTTGCTCGAATACATT--AGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||| || | | ||| | || |||||||| || |||||| | |||| Sbjct 6816966 TCAAAGCAGG-CTGGCCGCCGGCACAGTGCAGGTAGGAATAATGGAGTAGGAC-TCCGGT 6816909 Query 156 TCTATTTTGTTGGTTT 171 |||||| ||||||||| Sbjct 6816908 TCTATTGTGTTGGTTT 6816893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915157790976