Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidothrix_20coronata_20[refseq_20GCF_5F001604755.1_202016-03-31] 4,612 sequences; 1,079,577,334 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq109 77.0 2e-12 seq1966 75.2 7e-12 >seq109 Length=3201741 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||| ||| ||||||||||||||||||| Sbjct 3143636 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGACGGTGTGTACAAAGGGCAGGGACT 3143693 Query 109 TAATACAACGCAAGCT 124 |||| ||||| |||| Sbjct 3143694 TAAT-CAACGTGAGCT 3143708 >seq1966 Length=3153 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1728 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1671 Query 122 GCT 124 ||| Sbjct 1670 GCT 1668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300786994160