Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidothrix_20coronata_20[refseq_20GCF_5F001604755.1_202016-03-31] 4,612 sequences; 1,079,577,334 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1966 315 1e-83 seq169 93.3 8e-17 >seq1966 Length=3153 Score = 315 bits (348), Expect = 1e-83 Identities = 226/259 (87%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 1441 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 1500 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 1501 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGTATATA 1560 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 1561 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 1620 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1621 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1680 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 1681 TACGTCCCTGCCCTTTGTA 1699 >seq169 Length=2101261 Score = 93.3 bits (102), Expect = 8e-17 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 ||||||| |||| ||||| | |||| || | | ||| |||| ||| ||||| Sbjct 129035 GCACGCGTGCTATACTGAGTGGCTCAACTTGTGCCTACCCTCCACCGGCAGGCACGGGTA 128976 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | | | || | | ||| | ||||||| | | ||||||||| || | | | ||||||| Sbjct 128975 ACCCGTTGAACCCCATTCGCGATGGGGATCGGGGATTGCAATTCTTCCCCGTGAACGAGG 128916 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || |||||| | | ||||| ||| | |||||||| ||| |||||||||||| Sbjct 128915 AATTCCCAGTAAGTGTGGGTCATAAGCTCAGGTTGATTAAGTCTCTGCCCTTTGTA 128860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947156315136