Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidothrix_20coronata_20[refseq_20GCF_5F001604755.1_202016-03-31] 4,612 sequences; 1,079,577,334 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq182 215 2e-53 seq3545 158 4e-36 seq259 122 3e-25 seq563 111 5e-22 seq109 107 6e-21 seq256 104 8e-20 >seq182 Length=1952995 Score = 215 bits (238), Expect = 2e-53 Identities = 144/160 (90%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1223026 GACGAGAGTCAAGCTCAACAGGGTCTTCTTTCCCACCTGATTCCGCCAAGCCCATTCCCT 1223085 Query 339 TGGCTGTGGTTT---CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 |||||||||||| ||| || ||||| ||||||||||||||||||| || |||||||| Sbjct 1223086 TGGCTGTGGTTTCACCGCCGGAGAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTC 1223145 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 | | |||||||||| ||||||||||||||||||||||||| Sbjct 1223146 ACGTGCGTCACTAACTAGATGACGAGGCATTTGGCTACCT 1223185 >seq3545 Length=1492 Score = 158 bits (174), Expect = 4e-36 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1398 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGA 1457 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||||||||||||||||| |||||| Sbjct 1458 CATTCAGAGCACTGGGCAGAAATCACATCGCGTCA 1492 Score = 147 bits (162), Expect = 7e-33 Identities = 87/91 (96%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1 CTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGC 60 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||| Sbjct 61 GTCACTAATTAGATGACGAGGCATTTGGCTA 91 >seq259 Length=912908 Score = 122 bits (134), Expect = 3e-25 Identities = 113/140 (81%), Gaps = 9/140 (6%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATT--TCACAAAGTCGGACTAGAGTCAAGCTCA 295 || ||||||||| ||| |||| ||| || | ||| | | ||||||||||||||||| Sbjct 411407 TCTCACTTATTCAACATCTCTT--GTCTTTCTTTACAGTGCCAGACTAGAGTCAAGCTCA 411464 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||| || |||||||| |||||||| ||||||||||| ||||||||||||| || Sbjct 411465 ACAGGCTC--CTTTCCCCACTGATTCC---AAGCCCGTTCCTTTGGCTGTGGTTTTCCTG 411519 Query 356 GATAGTAGATAGGGACAGTG 375 ||||| ||||||| |||||| Sbjct 411520 GATAGCAGATAGGTACAGTG 411539 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAG-TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||| ||||| ||| ||||||| || ||| || | |||| ||||||||||| | | Sbjct 412278 CTTAACAGAGTAGTAGATTACTCCTACCCTTTTCCTGTGCTTTATTGAATTTCTTTGCCT 412337 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||| | |||||||||||||||||||||||||| ||| || Sbjct 412338 TGACACTTAGAGCACTGGGCAGAAATCACATTGCATCAGCA 412378 >seq563 Length=21558 Score = 111 bits (122), Expect = 5e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||| |||||| ||||||||||| || ||||||| || ||| ||||||||||| || Sbjct 21457 ACCTTAGGAGAGTGATAGTTACTCCTGCTGTTTACCTGCACTTCCCTGAATTTCTTCCCT 21516 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||||||||||||| ||||||||||||| || ||||| Sbjct 21517 TTGACATTCAGAGCTCTGGGCAGAAATCCCAGCACGTCA 21555 >seq109 Length=3201741 Score = 107 bits (118), Expect = 6e-21 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||||| |||||| |||||||||||||||||||||| || ||| ||||||||||| | Sbjct 3195149 ACCTTAGGAGAGTGATAGTTACTCCCGCCGTTTACCTGCACTTCACTGAATTTCTTCCTT 3195208 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||| | || ||||| ||||||||||||| || |||||| Sbjct 3195209 TTGCCCTTGAGAGCTCTGGGCAGAAATCCCAGCGCGTCA 3195247 >seq256 Length=960264 Score = 104 bits (114), Expect = 8e-20 Identities = 133/181 (73%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311 ||||||| |||| |||||| ||| ||||||||| | ||||||||| ||| ||||| Sbjct 819827 CACCTCTGAAGTTTCTTCACAGTGTCAGACTAGAGTTGTGATCAACAGGGGCTTATTTCC 819768 Query 312 CCGCTGATTCC-GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 | ||||||| | |||||| ||||||| | | |||| | |||||| |||||| Sbjct 819767 CTGCTGATTTTTGACAAGCCTGTTCCCTATGTTTC--TTTCTCAGCATAGTAAGTAGGGA 819710 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 ||||| || |||| || ||| |||| | ||||||||| |||| || ||||||| | Sbjct 819709 CAGTGAGAGTCTC----ATTCATCCATGAACATCACTAATTGAATGATGAAGCATTTGCC 819654 Query 431 T 431 | Sbjct 819653 T 819653 Score = 82.4 bits (90), Expect = 2e-13 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || |||||| |||||| ||||||| |||| | || | ||||||||||| ||||||| Sbjct 820072 TTCTGCTCTGCAGGAGGTTTCTGTCCTCCCTTAG---CTTGTAGGACACCTGTGTTATGG 820016 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 ||| |||| || | | ||||| |||||| || |||||||| || Sbjct 820015 TTTGACAGGGGTACTGTCCCAGTCAAACTACCTACCTGACACTG 819972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635124584576