Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidothrix_20coronata_20[refseq_20GCF_5F001604755.1_202016-03-31] 4,612 sequences; 1,079,577,334 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1966 589 7e-166 seq109 268 3e-69 seq302 100 9e-19 >seq1966 Length=3153 Score = 589 bits (652), Expect = 7e-166 Identities = 443/513 (86%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 582 GTACTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCT 523 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 463 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 462 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 403 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 402 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 343 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA--GCCCCGAAG----GG 293 | |||||| |||||| ||| ||||||| |||||||| | ||| | | | || | Sbjct 342 CGAAGGCCGTGCGATCCGTCAAGTTATCATGAATCATC--GGATCGGCGGGCAGAGCCCG 285 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 284 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATT 225 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 224 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 166 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || ||| | | |||||| |||||||||||| Sbjct 165 TTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCT 106 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 105 TAATCTTTGAGACAAGCATATGACTACTGGCAG 73 >seq109 Length=3201741 Score = 268 bits (296), Expect = 3e-69 Identities = 295/386 (76%), Gaps = 15/386 (4%) Strand=Plus/Plus Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||||||||||||||| ||||||||| |||||| | |||||||||||| | Sbjct 3145247 CTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACAGACAG 3145306 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 ||||||||||||||||||||||||| ||| ||||| | | |||| | | || | ||| Sbjct 3145307 TACCATCGAAAGTTGATAGGGCAGACATTCGAATGGGTCGTTGCCGCCGCGGGGGCGTGC 3145366 Query 252 GATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC----GTTGGTTTTTT 305 ||| | | | ||||| || ||||||| | || | |||| ||||| |||| Sbjct 3145367 GATCAGCTCGAGGTTATCTAGAGTCACCAAAGCTGCCGGGCGGGCCCGGGTTGG-TTTTG 3145425 Query 306 ATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAA 362 ||| |||||| ||| | || || ||||| | | | ||||||||||||||||||| Sbjct 3145426 GTCTGATAAATGCACGTGTCCCCAGAGGTCGGCGCTCATCGGCATGTATTAGCTCTAGAA 3145485 Query 363 TTACCACGGTTATCCATGTAGTA----AGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||| |||||||| | || | ||| | |||| ||| |||||||||||||| Sbjct 3145486 TTACCACAGTTATCCAAGGAGCAGGAGAGGAGTGACCAAAGGAACCATAACTGATTTAAT 3145545 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||||||| | | |||||||||||||||||||||| ||| Sbjct 3145546 GAGCCATTCGCAGTTTCACTGTACCGCCCATGTGTACTTAGACATGCATGGCTTAAGCTT 3145605 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||| Sbjct 3145606 TGAGACAAGCATATG-CTACTGGCAG 3145630 >seq302 Length=961325 Score = 100 bits (110), Expect = 9e-19 Identities = 79/96 (82%), Gaps = 14/96 (15%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 950243 CTGATTTAATGAGCCATTAGCAGTTTCACTGTA-------------CTTAGACATGCATG 950197 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||| ||||||| || Sbjct 950196 GCTTAAGCTTTGAGACAAGCATATG-CTACTGGTAG 950162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510330340352